Rmu_sc0002405.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002405.1
N/A
Physical Location & Seq
Reverse (-)
10144 .. 10470
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgactcgtcatatggatgattcgctccaatacgagtgtatgaatgaagaagaccccataaggttgtgggtctcactcgaagatagatttggcaacgtccgtgactccctgcttcctgacctagaagtgatatggcatagcctccacttctgtgatttcaagtcagttcttgactacaactcggaagcactttgcattaaatccttaatggaattttgtggtaaagagatcacagatgcgatattgattgagaacactttctctaccttccctgtctctgcattgatggttactaagaactatcgaatcgatgttgttgcaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.53

Weight (kDa)

4.49

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AleI CACNNNNGTG 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 76, 280
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 1 cut(s) 280
BcgI CGANNNNNNTGC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 76, 280
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 76
BssMI GATC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 309
CviJI RGCY 1 cut(s) 141
CviKI_1 RGCY 1 cut(s) 141
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 76
FaiI YATR 6 cut(s) 12, 14, 41, 59, 133, 138
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 122
HinfI GANTC 4 cut(s) 4, 20, 104, 306
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 116, 170
HpyAV CCTTC 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 195, 281, 320
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 122, 129, 285, 306
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 101, 289
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 59, 62, 92
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 2 cut(s) 15, 150
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 20, 306
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 15, 150
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 65, 99, 123, 269
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 15, 150
Sse9I AATT 1 cut(s) 212
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 78, 304, 309
TasI AATT 1 cut(s) 212
TfiI GAWTC 2 cut(s) 20, 306
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 56, 60
TspGWI ACGGA 1 cut(s) 89
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.