Rmu_sc0002406.1_g000004
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002406.1
N/A
Physical Location & Seq
Forward (+)
15577 .. 15867
291 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002406.1_g000004.1.cds

Sequence Viewer

Length: 291 bp
atgtttactggcaaatgtccaactgatgaaagtttcataggagaagctaacgttattcaatgggtgcaattagcttttccccataacattgcacaagtacgaggccctgagttgtcacacttctcgaataccatccgtgaagaagaattgaagtgcttggtctcagactcagttatggaggttgagctttgctgcactgttgcctctccagagggacgcattagctttagggatgcccttcacaaacttgaaactgctagagagacccttttgaagctatgctcactttga

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

5.08

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 51
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 4 cut(s) 59, 151, 251, 274
AluBI AGCT 5 cut(s) 47, 74, 187, 225, 277
AluI AGCT 5 cut(s) 47, 74, 187, 225, 277
Alw26I GTCTC 2 cut(s) 166, 257
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 166, 257
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 104
BmsI GCATC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 192
BsaI GGTCTC 2 cut(s) 166, 257
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 87
BseGI GGATG 2 cut(s) 132, 238
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 3 cut(s) 99, 177, 183
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 166, 257
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 105
Bso31I GGTCTC 2 cut(s) 166, 257
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 3 cut(s) 100, 176, 182
BspTNI GGTCTC 2 cut(s) 166, 257
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 108, 163, 169
BstF5I GGATG 2 cut(s) 132, 238
BstMAI GTCTC 2 cut(s) 166, 257
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 132, 238
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 6 cut(s) 47, 74, 105, 187, 225, 277
CviKI_1 RGCY 6 cut(s) 47, 74, 105, 187, 225, 277
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 3 cut(s) 108, 163, 169
Eco31I GGTCTC 2 cut(s) 166, 257
EcoO109I RGGNCCY 1 cut(s) 104
FaiI YATR 4 cut(s) 38, 84, 176, 280
FaqI GGGAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 2 cut(s) 119, 245
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 105
HgaI GACGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 124, 209
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 67, 92, 195
HpyF3I CTNAG 3 cut(s) 108, 163, 169
HpySE526I ACGT 1 cut(s) 51
LpnPI CCDG 2 cut(s) 120, 222
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 114
MboII GAAGA 2 cut(s) 152, 155
MluCI AATT 2 cut(s) 68, 146
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 95, 172, 205, 214
NmuCI GTSAC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp1406I AACGTT 1 cut(s) 51
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SatI GCNGC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 161
SetI ASST 7 cut(s) 49, 54, 76, 183, 189, 227, 279
SfaNI GCATC 1 cut(s) 223
Sse9I AATT 2 cut(s) 68, 146
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 125
TasI AATT 2 cut(s) 68, 146
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 25, 42
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 202
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.