Rmu_sc0002407.1_g000002

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002407.1
N/A
Physical Location & Seq
Forward (+)
6975 .. 7525
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002407.1_g000002.1.cds

Sequence Viewer

Length: 420 bp
atggtggaactctttgctggggctgctattggagttctattcactgcagtttatgatggaattaaagtgctgatagcaaggaaaatcatttccagatcctttttcaagagcatcacatccagattaaactctctgaaatcgctatttgaggagattgaagaatgcaacaccaagctcccctattgctcagcggaggagctggaagttggaggtgctaaaggtgtagagcgtaaggaatggaaaaagaactgcaatagtgcttcaagatattcaagggaatacaaagacaactacaactgcggtgcaagatatgtgggggattcaaaaaaaattgcagctgcaatgcaacatatgcaggtggatgtgaagaaaacgacacttgctaatcaagctattgaggtgcatgtgaacaaaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.59

Weight (kDa)

9.16

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 2 cut(s) 191, 300
AclWI GGATC 1 cut(s) 90
AgsI TTSAA 5 cut(s) 106, 158, 264, 273, 324
AluBI AGCT 4 cut(s) 175, 199, 338, 392
AluI AGCT 4 cut(s) 175, 199, 338, 392
AlwI GGATC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 23, 335, 338
BbvI GCAGC 3 cut(s) 10, 325, 347
BccI CCATC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 3 cut(s) 24, 336, 339
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 3 cut(s) 25, 337, 340
BmsI GCATC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 348
BseGI GGATG 2 cut(s) 116, 367
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 164, 209
BseXI GCAGC 3 cut(s) 10, 325, 347
BseYI CCCAGC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 2 cut(s) 191, 300
BspCNI CTCAG 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 348
BssMI GATC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 116, 367
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 23, 352, 389
BstNSI RCATGY 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 10, 325, 347
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtsCI GGATG 2 cut(s) 116, 367
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 346
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 1 cut(s) 404
CviJI RGCY 5 cut(s) 23, 175, 199, 338, 392
CviKI_1 RGCY 5 cut(s) 23, 175, 199, 338, 392
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
FaeI CATG 1 cut(s) 407
FaiI YATR 5 cut(s) 54, 312, 351, 353, 405
FatI CATG 1 cut(s) 403
FauNDI CATATG 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 24, 336, 339
FokI GGATG 2 cut(s) 103, 374
Fsp4HI GCNGC 3 cut(s) 24, 336, 339
GluI GCNGC 3 cut(s) 24, 336, 339
GsaI CCCAGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 407
HinfI GANTC 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 4 cut(s) 93, 106, 120, 264
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4V TGCA 9 cut(s) 47, 165, 252, 305, 335, 341, 346, 355, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 352, 389
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 1 cut(s) 407
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 180, 196
LpnPI CCDG 5 cut(s) 3, 106, 133, 185, 341
Lsp1109I GCAGC 3 cut(s) 10, 325, 347
LweI GCATC 1 cut(s) 120
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 2 cut(s) 170, 379
MflI RGATCY 1 cut(s) 95
MluCI AATT 2 cut(s) 60, 330
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 142, 187, 203, 391
MseI TTAA 2 cut(s) 63, 125
MspA1I CMGCKG 2 cut(s) 191, 338
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 23, 352, 389
NdeI CATATG 1 cut(s) 351
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 407
NspI RCATGY 1 cut(s) 407
PaqCI CACCTGC 1 cut(s) 346
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 25, 337, 340
PspFI CCCAGC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 63, 125
SatI GCNGC 3 cut(s) 24, 336, 339
Sau3AI GATC 1 cut(s) 95
SetI ASST 8 cut(s) 177, 201, 214, 223, 340, 360, 394, 402
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 2 cut(s) 60, 330
SsiI CCGC 2 cut(s) 191, 300
TasI AATT 2 cut(s) 60, 330
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 63, 125
Tru9I TTAA 2 cut(s) 63, 125
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 23, 335, 338
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.