Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002449.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

95563 .. 98691

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgggtttggacggttcaccttggctccatgtgcccgatgatccaactcttcgactatgccgggtagcatggccaccatggggattcgccttcttcttatggagagtgaaaaaagatatcttgttgtttcagattgggtcctccatcgacttcccaaatgatccaggctgtagaaaaagagcaagaacattcttctcttcaagaaaaactggatcgggagctgaaagaattggacaaggctctcgagcaaaaggaggtaatgtttcttcaaggactttttgtctttgctacatctccaacttcctggagatgttgaagcggttatcagctgaaatgaagcggtttacaagttctgatacctcggttcttaagctgtatgagaagaaggttcatgagttagaacatgagaagaaagcccttcagagagagattgaagagttgagacaaaatctttcaaatatcttatctacttctggggatggagctcaaaagttaaaggaggattatctacacaagttgaaccttcctgaaggacaggtttctgagctgaaaaagaaacaggatgctcaagcccaattgttgagacaaaaacaaaaatgcgataaggctgcaaggagactacaggatgaaattcagagacctaaaagagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

217

Amino Acids

24.95

Weight (kDa)

9.79

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIF21A_4th	PF25764	110 - 216	9e-25	KIF21A-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	319, 340
AclWI	GGATC	3 cut(s)	35, 155, 220
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	2 cut(s)	404, 549
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	201, 270, 316, 434, 456, 520
AhdI	GACNNNNNGTC	1 cut(s)	279
AjnI	CCWGG	2 cut(s)	163, 303
AluBI	AGCT	5 cut(s)	221, 329, 373, 485, 547
AluI	AGCT	5 cut(s)	221, 329, 373, 485, 547
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	4 cut(s)	436, 577, 610, 631
AlwI	GGATC	3 cut(s)	35, 155, 220
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BalI	TGGCCA	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	2 cut(s)	152, 473
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	165, 305
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	4 cut(s)	436, 577, 610, 631
BfmI	CTRYAG	2 cut(s)	169, 620
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	3 cut(s)	62, 165, 305
Bme18I	GGWCC	1 cut(s)	138
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	26, 139
BmrFI	CCNGG	3 cut(s)	62, 165, 305
BmsI	GCATC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	20, 77, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	165, 305
BseDI	CCNNGG	3 cut(s)	20, 77, 360
BseGI	GGATG	3 cut(s)	484, 568, 631
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	4 cut(s)	436, 577, 610, 631
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	631
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	36, 487
Bsp143I	GATC	3 cut(s)	40, 160, 212
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	2 cut(s)	319, 340
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	26, 139
BspPI	GGATC	3 cut(s)	35, 155, 220
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	20, 77, 360
BssMI	GATC	3 cut(s)	40, 160, 212
BssT1I	CCWWGG	2 cut(s)	20, 77
Bst2UI	CCWGG	2 cut(s)	165, 305
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	3 cut(s)	54, 202, 429
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	484, 568, 631
BstKTI	GATC	3 cut(s)	43, 163, 215
BstMAI	GTCTC	4 cut(s)	436, 577, 610, 631
BstMBI	GATC	3 cut(s)	40, 160, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	2 cut(s)	165, 305
BstSCI	CCNGG	3 cut(s)	60, 163, 303
BstSFI	CTRYAG	2 cut(s)	169, 620
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	484, 568, 631
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	138
CviAII	CATG	5 cut(s)	29, 69, 78, 392, 404
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	3 cut(s)	42, 162, 214
DpnII	GATC	3 cut(s)	40, 160, 212
DriI	GACNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	3 cut(s)	54, 202, 429
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	3 cut(s)	54, 202, 429
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	20, 77
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	404, 549
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	163, 303
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	20, 77
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	20, 77
FaeI	CATG	5 cut(s)	32, 72, 81, 395, 407
FaiI	YATR	8 cut(s)	30, 58, 70, 79, 100, 378, 393, 405
FatI	CATG	5 cut(s)	28, 68, 77, 391, 403
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	3 cut(s)	491, 575, 638
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	609
GluI	GCNGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	5 cut(s)	32, 72, 81, 395, 407
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	17, 345
Hpy188I	TCNGA	5 cut(s)	132, 355, 423, 544, 636
Hpy188III	TCNNGA	5 cut(s)	201, 216, 243, 392, 527
Hpy8I	GTNNAC	2 cut(s)	17, 345
HpyAV	CCTTC	5 cut(s)	100, 379, 428, 524, 533
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	32, 72, 81, 395, 407
Kzo9I	GATC	3 cut(s)	40, 160, 212
LmnI	GCTCC	3 cut(s)	30, 218, 482
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	1 cut(s)	553
MalI	GATC	3 cut(s)	42, 162, 214
MboI	GATC	3 cut(s)	40, 160, 212
MboII	GAAGA	8 cut(s)	41, 85, 184, 189, 258, 394, 421, 446
MfeI	CAATTG	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	36, 487
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	3 cut(s)	228, 575, 630
MluNI	TGGCCA	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	68, 321
MnlI	CCTC	4 cut(s)	151, 248, 370, 493
Mox20I	TGGCCA	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	3 cut(s)	369, 494, 652
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	3 cut(s)	62, 165, 305
MunI	CAATTG	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	165, 305
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	40, 160, 212
NlaIII	CATG	5 cut(s)	32, 72, 81, 395, 407
NlaIV	GGNNCC	2 cut(s)	26, 139
PaeR7I	CTCGAG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	163, 303
PspGI	CCWGG	2 cut(s)	163, 303
PspN4I	GGNNCC	2 cut(s)	26, 139
PspPI	GGNCC	1 cut(s)	138
PspPPI	RGGWCCY	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	369, 494, 652
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	3 cut(s)	40, 160, 212
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	3 cut(s)	62, 165, 305
SduI	GDGCHC	2 cut(s)	36, 487
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	2 cut(s)	169, 620
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	3 cut(s)	243, 368, 567
SmoI	CTYRAG	3 cut(s)	243, 368, 567
Sse9I	AATT	3 cut(s)	228, 575, 630
SsiI	CCGC	2 cut(s)	319, 340
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	3 cut(s)	60, 163, 303
StyI	CCWWGG	2 cut(s)	20, 77
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	52, 147, 244
TasI	AATT	3 cut(s)	228, 575, 630
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	369, 494, 652
Tru9I	TTAA	3 cut(s)	369, 494, 652
TseI	GCWGC	1 cut(s)	608
TspDTI	ATGAA	3 cut(s)	350, 380, 642
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.