Rmu_sc0002455.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002455.1
N/A
Physical Location & Seq
Reverse (-)
4111 .. 4914
804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
atgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaaagtacgtgactccctgcttcctgacccagaaaagactctctctactttccccgtctctgcattgatggttgctaagaactatcgaatcgatgttactgcaagacggatcacaaggtttcatgagctaattggagctatgaatgtcattgaaaatcatgacaacatccttgtgaagaactataatttgagatccgtgggaacagagcatattccggaatccaattatagtcgcgccccaaagagaaggcgccaagagcgaaaccctaatcttagagatacatttggatgttctgagggaggcaacccctctggccatgttggtggcgccaccaacactaagagccatctaaatgacgctttcaaagcgcctcaatcaatggagtttgagcaaagagatgtatgttctcgatgtggagtgtctgatcattgggcacacatttgtagagctcgtgaagaacttgtcaccgcctacaaagcaaattgtgaagcagcagaagctcactatgtggaacaagaagatcaagaagatgatctagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

198

Amino Acids

22.65

Weight (kDa)

5.79

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 303, 380
AccII CGCG 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 1 cut(s) 522
AclWI GGATC 2 cut(s) 170, 240
AcoI YGGCCR 1 cut(s) 367
AcyI GRCGYC 2 cut(s) 304, 381
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 206, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 4 cut(s) 181, 191, 503, 554
AluI AGCT 4 cut(s) 181, 191, 503, 554
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 2 cut(s) 37, 115
AlwI GGATC 2 cut(s) 170, 240
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 545
AspLEI GCGC 4 cut(s) 290, 306, 383, 424
AsuHPI GGTGA 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 2 cut(s) 303, 380
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 557
BccI CCATC 2 cut(s) 115, 408
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 37, 115
BfaI CTAG 1 cut(s) 590
BfoI RGCGCY 3 cut(s) 307, 384, 425
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 305, 382
BpiI GAAGAC 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 304, 381
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 268
BseAI TCCGGA 1 cut(s) 268
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 219, 347
BseMII CTCAG 1 cut(s) 339
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 303, 380
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 37, 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 490, 505
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 5 cut(s) 162, 245, 478, 574, 586
BspACI CCGC 1 cut(s) 522
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 2 cut(s) 175, 211
BspLI GGNNCC 2 cut(s) 305, 382
BspPI GGATC 2 cut(s) 170, 240
BspT107I GGYRCC 2 cut(s) 303, 380
BspTNI GGTCTC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 5 cut(s) 162, 245, 478, 574, 586
BssNI GRCGYC 2 cut(s) 304, 381
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
BstACI GRCGYC 2 cut(s) 304, 381
BstBAI YACGTR 1 cut(s) 62
BstDEI CTNAG 4 cut(s) 129, 326, 348, 393
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 219, 347
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 3 cut(s) 307, 384, 425
BstHHI GCGC 4 cut(s) 290, 306, 383, 424
BstKTI GATC 5 cut(s) 165, 248, 481, 577, 589
BstMAI GTCTC 2 cut(s) 37, 115
BstMBI GATC 5 cut(s) 162, 245, 478, 574, 586
BstMWI GCNNNNNNNGC 4 cut(s) 310, 419, 530, 551
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 557
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 219, 347
CciI TCATGA 2 cut(s) 175, 211
CfoI GCGC 4 cut(s) 290, 306, 383, 424
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 176, 212, 371
CviJI RGCY 7 cut(s) 25, 181, 191, 369, 399, 503, 554
CviKI_1 RGCY 7 cut(s) 25, 181, 191, 369, 399, 503, 554
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 4 cut(s) 129, 326, 348, 393
DinI GGCGCC 2 cut(s) 305, 382
DpnI GATC 5 cut(s) 164, 247, 480, 576, 588
DpnII GATC 5 cut(s) 162, 245, 478, 574, 586
DraIII CACNNNGTG 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 505
EgeI GGCGCC 2 cut(s) 305, 382
EheI GGCGCC 2 cut(s) 305, 382
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 179, 215, 374
FaiI YATR 9 cut(s) 177, 194, 213, 237, 264, 282, 372, 457, 561
FatI CATG 3 cut(s) 175, 211, 370
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 2 cut(s) 206, 354
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 1 cut(s) 590
GlaI GCGC 4 cut(s) 289, 305, 382, 423
GluI GCNGC 1 cut(s) 546
HaeII RGCGCY 3 cut(s) 307, 384, 425
HaeIII GGCC 1 cut(s) 369
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 419
HhaI GCGC 4 cut(s) 290, 306, 383, 424
Hin1I GRCGYC 2 cut(s) 304, 381
Hin1II CATG 3 cut(s) 179, 215, 374
Hin6I GCGC 4 cut(s) 288, 304, 381, 422
HinP1I GCGC 4 cut(s) 288, 304, 381, 422
HinfI GANTC 4 cut(s) 65, 91, 141, 272
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 511
Hpy188I TCNGA 2 cut(s) 349, 478
Hpy188III TCNNGA 8 cut(s) 77, 176, 212, 269, 462, 506, 578, 590
HpyAV CCTTC 2 cut(s) 15, 294
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 116, 155
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 419, 530, 551
HpyF3I CTNAG 4 cut(s) 129, 326, 348, 393
HpySE526I ACGT 1 cut(s) 61
Hsp92I GRCGYC 2 cut(s) 304, 381
Hsp92II CATG 3 cut(s) 179, 215, 374
HspAI GCGC 4 cut(s) 288, 304, 381, 422
KasI GGCGCC 2 cut(s) 303, 380
Kpn2I TCCGGA 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 162, 245, 478, 574, 586
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 31, 83, 90, 96, 282, 351
Lsp1109I GCAGC 1 cut(s) 557
MaeI CTAG 1 cut(s) 590
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 3 cut(s) 62, 148, 517
MalI GATC 5 cut(s) 164, 247, 480, 576, 588
MboI GATC 5 cut(s) 162, 245, 478, 574, 586
MboII GAAGA 7 cut(s) 20, 23, 53, 241, 521, 584, 593
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 490, 505
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 4 cut(s) 183, 238, 277, 535
MluNI TGGCCA 1 cut(s) 369
Mly113I GGCGCC 2 cut(s) 304, 381
MlyI GAGTC 2 cut(s) 59, 85
MnlI CCTC 4 cut(s) 343, 347, 373, 435
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 268
MscI TGGCCA 1 cut(s) 369
MslI CAYNNNNRTG 4 cut(s) 224, 340, 375, 405
Msp20I TGGCCA 1 cut(s) 369
MspI CCGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 310, 419, 530, 551
NarI GGCGCC 2 cut(s) 304, 381
NdeII GATC 5 cut(s) 162, 245, 478, 574, 586
NlaIII CATG 3 cut(s) 179, 215, 374
NlaIV GGNNCC 2 cut(s) 305, 382
NmuCI GTSAC 2 cut(s) 62, 517
PagI TCATGA 2 cut(s) 175, 211
PfeI GAWTC 2 cut(s) 141, 272
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 59, 85
PluTI GGCGCC 2 cut(s) 307, 384
PpsI GAGTC 2 cut(s) 59, 85
Ppu21I YACGTR 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 305, 382
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 4 cut(s) 224, 340, 375, 405
SacI GAGCTC 1 cut(s) 505
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 5 cut(s) 162, 245, 478, 574, 586
SchI GAGTC 2 cut(s) 59, 85
SduI GDGCHC 2 cut(s) 490, 505
SetI ASST 6 cut(s) 64, 173, 183, 193, 505, 556
SfoI GGCGCC 2 cut(s) 305, 382
SmiMI CAYNNNNRTG 4 cut(s) 224, 340, 375, 405
Sse9I AATT 4 cut(s) 183, 238, 277, 535
SsiI CCGC 1 cut(s) 522
SspDI GGCGCC 2 cut(s) 303, 380
SspMI CTAG 1 cut(s) 590
SstI GAGCTC 1 cut(s) 505
TaiI ACGT 1 cut(s) 64
TaqI TCGA 4 cut(s) 39, 139, 144, 463
TasI AATT 4 cut(s) 183, 238, 277, 535
TfiI GAWTC 2 cut(s) 141, 272
TseFI GTSAC 2 cut(s) 62, 517
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 2 cut(s) 62, 517
TspDTI ATGAA 4 cut(s) 17, 21, 164, 209
TspGWI ACGGA 2 cut(s) 175, 238
XbaI TCTAGA 1 cut(s) 589
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.