Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

450422 .. 451546

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggcggaccgatatttcgcgaacgacatgccggaattcgtagaagaggcgccggcggacgaggctaaagtgggctctttcacaaagctactgtctcttccttatccaactctctccggtatgctcagaagctccggttgggacctcaaacagacggtggtgatgcagacatggggtgtgagtggcaagcgtgtggaagattataccatgtatacaggggctcttggaactgcttggttggcctttaaggcttaccaagtcaccaacaaccacgctgatcttaaattatgctctgacattgttaaggcctgtgatatagcttctagagattctgggtatgtgtcattcatatgtgggcgggccggcgtttgtgccctcggtgctgtggtggcaaagcatgctggtgatgaaatgctacttggccactacttatcaaaatttaaagaggtggttgatagtaacgcttgtttctcaaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0008289 GO:0009787 GO:0009791 GO:0009966 GO:0010154 GO:0010162 GO:0010231 GO:0010427 GO:0010431 GO:0010646 GO:0016020 GO:0019840 GO:0019898 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0031406 GO:0032501 GO:0032502 GO:0032504 GO:0033293 GO:0036094 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0044425 GO:0044464 GO:0048316 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071695 GO:0071944 GO:0097437 GO:1901419 GO:1905957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LANC_like

Protein Analysis

160

Amino Acids

17.38

Weight (kDa)

5.55

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LANC_like	PF05147	65 - 155	7.4e-19	Lanthionine synthetase C-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	20
AciI	CCGC	3 cut(s)	5, 56, 358
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	35, 437
AcyI	GRCGYC	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 402, 434
AluBI	AGCT	3 cut(s)	88, 132, 320
AluI	AGCT	3 cut(s)	88, 132, 320
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	4 cut(s)	240, 306, 360, 421
ApoI	RAATTY	2 cut(s)	35, 437
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 77, 109
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	7, 142, 360
AsuHPI	GGTGA	3 cut(s)	172, 253, 416
AvaII	GGWCC	2 cut(s)	7, 142
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	77, 223
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	7, 142
BmgT120I	GGNCC	3 cut(s)	7, 142, 360
BmiI	GGNNCC	2 cut(s)	51, 143
BmsI	GCATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	2 cut(s)	116, 134
Bse118I	RCCGGY	2 cut(s)	52, 362
BseDI	CCNNGG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	4 cut(s)	242, 308, 362, 423
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	5 cut(s)	32, 53, 117, 135, 363
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	242, 308, 362, 423
Bsp1286I	GDGCHC	3 cut(s)	77, 223, 376
Bsp143I	GATC	1 cut(s)	277
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	3 cut(s)	5, 56, 358
BspANI	GGCC	4 cut(s)	242, 308, 362, 423
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	51, 143
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	2 cut(s)	52, 362
BssAI	RCCGGY	2 cut(s)	52, 362
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	277
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	50
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	93, 157
Bst6I	CTCTTC	2 cut(s)	39, 102
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	5 cut(s)	54, 188, 360, 364, 399
BstDEI	CTNAG	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 239, 248, 380, 389, 398
BstNSI	RCATGY	2 cut(s)	31, 401
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	242, 308, 362, 423
BtuMI	TCGCGA	1 cut(s)	20
Cac8I	GCNNGC	5 cut(s)	54, 188, 360, 364, 399
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	2 cut(s)	52, 362
Cfr13I	GGNCC	3 cut(s)	7, 142, 360
CpoI	CGGWCCG	1 cut(s)	7
CspI	CGGWCCG	1 cut(s)	7
CviAII	CATG	4 cut(s)	28, 171, 208, 398
DdeI	CTNAG	1 cut(s)	125
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	39, 102
EarI	CTCTTC	2 cut(s)	39, 102
EciI	GGCGGA	2 cut(s)	20, 71
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	77, 223
Eco47I	GGWCC	2 cut(s)	7, 142
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	35
EcoT38I	GRGCYC	2 cut(s)	77, 223
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
FaeI	CATG	4 cut(s)	31, 174, 211, 401
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	27, 170, 207, 397
FauI	CCCGC	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	212
FriOI	GRGCYC	2 cut(s)	77, 223
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	242, 308, 362, 423
HapII	CCGG	5 cut(s)	32, 53, 117, 135, 363
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	31, 174, 211, 401
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	5 cut(s)	32, 53, 117, 135, 363
HphI	GGTGA	3 cut(s)	172, 253, 416
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	128, 295
Hpy188III	TCNNGA	2 cut(s)	19, 324
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	93, 157
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 239, 248, 380, 389, 398
HpyF3I	CTNAG	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	31, 174, 211, 401
HspAI	GCGC	1 cut(s)	50
KasI	GGCGCC	1 cut(s)	49
KroI	GCCGGC	2 cut(s)	52, 362
KroNI	GCCGGC	2 cut(s)	54, 364
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	45, 66, 130, 148, 201, 318, 322, 376, 387
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	259, 458
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	56, 89, 209
MhlI	GDGCHC	3 cut(s)	77, 223, 376
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	3 cut(s)	35, 284, 437
MluNI	TGGCCA	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	40, 55, 155, 386, 439
Mox20I	TGGCCA	1 cut(s)	423
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	2 cut(s)	52, 362
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	5 cut(s)	246, 282, 303, 441, 481
MslI	CAYNNNNRTG	2 cut(s)	349, 402
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	5 cut(s)	32, 53, 117, 135, 363
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	6 cut(s)	62, 239, 248, 380, 389, 398
NaeI	GCCGGC	2 cut(s)	54, 364
NarI	GGCGCC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	1 cut(s)	277
NgoMIV	GCCGGC	2 cut(s)	52, 362
NlaIII	CATG	4 cut(s)	31, 174, 211, 401
NlaIV	GGNNCC	2 cut(s)	51, 143
NmuCI	GTSAC	1 cut(s)	259
NruI	TCGCGA	1 cut(s)	20
NspI	RCATGY	2 cut(s)	31, 401
PaeI	GCATGC	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	308
PdiI	GCCGGC	2 cut(s)	54, 364
PfeI	GAWTC	1 cut(s)	329
PluTI	GGCGCC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	51, 143
PspPI	GGNCC	3 cut(s)	7, 142, 360
PspPPI	RGGWCCY	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	349, 402
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SaqAI	TTAA	5 cut(s)	246, 282, 303, 441, 481
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	3 cut(s)	7, 142, 360
SduI	GDGCHC	3 cut(s)	77, 223, 376
SetI	ASST	5 cut(s)	90, 134, 147, 322, 450
SfaNI	GCATC	1 cut(s)	153
SfoI	GGCGCC	1 cut(s)	51
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	2 cut(s)	7, 142
SmiMI	CAYNNNNRTG	2 cut(s)	349, 402
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	35, 284, 437
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	3 cut(s)	5, 56, 358
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	93, 157
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	35, 284, 437
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	5 cut(s)	246, 282, 303, 441, 481
Tru9I	TTAA	5 cut(s)	246, 282, 303, 441, 481
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	337, 423
VpaK11BI	GGWCC	2 cut(s)	7, 142
XapI	RAATTY	2 cut(s)	35, 437
XbaI	TCTAGA	1 cut(s)	323
XceI	RCATGY	2 cut(s)	31, 401
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.