Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

473936 .. 474466

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggcgaagaagagaaagcacagcgagagtgaggctgcgccgcagaagaaggaggaggtggctccggagagacccaaacgaacgcttctgggctggaaggacaagaaggatgaccaacccaaagaaactgactccacaccagtcttcaggaacaaagagaaggtcctcgttacttgttctcgtcgaattaattacaggtatcgacatttgatgttgaatgtggtggacctattgcctcattgcaagaaggacaacaaggtggagtccaagtcgagtaaaggtgcaacccttaatgagctggttgagctaaagagttgctcttcctgtctgtttttcgaggtaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

9.51

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	2 cut(s)	298, 307
AluI	AGCT	2 cut(s)	298, 307
Alw26I	GTCTC	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	163, 226
AvaII	GGWCC	2 cut(s)	163, 226
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	36, 41
BlsI	GCNGC	2 cut(s)	37, 42
Bme18I	GGWCC	2 cut(s)	163, 226
BmgT120I	GGNCC	2 cut(s)	163, 226
BmiI	GGNNCC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	64
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	64
BspACI	CCGC	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	5, 325
BstF5I	GGATG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	163, 226
CviJI	RGCY	5 cut(s)	35, 62, 93, 298, 307
CviKI_1	RGCY	5 cut(s)	35, 62, 93, 298, 307
Eam1104I	CTCTTC	2 cut(s)	5, 325
EarI	CTCTTC	2 cut(s)	5, 325
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	163, 226
Eco57I	CTGAAG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	36, 41
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	36, 41
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	36, 41
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	131, 263
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	65, 148
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	5 cut(s)	43, 91, 100, 154, 241
HpyCH4V	TGCA	2 cut(s)	243, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	74, 78, 79, 133, 153, 181, 284, 337
Lsp1109I	GCAGC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	19, 22, 58, 136, 312
MluCI	AATT	3 cut(s)	186, 190, 343
MlyI	GAGTC	2 cut(s)	125, 272
MnlI	CCTC	6 cut(s)	25, 46, 49, 176, 246, 331
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	2 cut(s)	189, 291
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	37, 42
PleI	GAGTC	2 cut(s)	125, 271
PpsI	GAGTC	2 cut(s)	125, 271
PpuMI	RGGWCCY	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	163, 226
PspPPI	RGGWCCY	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	189, 291
SatI	GCNGC	2 cut(s)	36, 41
Sau96I	GGNCC	2 cut(s)	163, 226
SchI	GAGTC	2 cut(s)	125, 272
SetI	ASST	9 cut(s)	60, 165, 200, 231, 261, 283, 300, 309, 342
SinI	GGWCC	2 cut(s)	163, 226
Sse9I	AATT	3 cut(s)	186, 190, 343
SsiI	CCGC	1 cut(s)	41
TaqI	TCGA	4 cut(s)	184, 202, 272, 336
TasI	AATT	3 cut(s)	186, 190, 343
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	189, 291
Tru9I	TTAA	2 cut(s)	189, 291
TseI	GCWGC	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	163, 226
VspI	ATTAAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.