Rmu_sc0002481.1_g000062

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002481.1
N/A
Physical Location & Seq
Forward (+)
228340 .. 228708
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgatggggggtcggagacacaacgcccagtcgagatcgagggtcggaattgccatagccattggagtccttctcggttgtgtcttcgccttgtgcttccccaatggcttcctctccatttccaatcctgcccctatgctcaaccgccgcttcgcccattccattgcccaggttcgcttcctcttctccgattctggcttcctcttatttcctctctttgtttccgtcatagtttactatttgaatgaaatgggtgatcactgcttgagattctggtgcaaaatgatgccagttgactttggcttttggtgtgtatgtacttctgaatcaaacccattaactgtaactgaacatttgatgtttgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

8.66

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 145, 148
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 10
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpuEI CTTGAG 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 28, 290
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 28, 290
BsmAI GTCTC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 35, 256
BspACI CCGC 2 cut(s) 145, 148
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 28, 290
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 35, 256
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 188
BstKTI GATC 2 cut(s) 38, 259
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 35, 256
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 4 cut(s) 59, 108, 198, 303
CviKI_1 RGCY 4 cut(s) 59, 108, 198, 303
CviQI GTAC 1 cut(s) 318
DpnI GATC 2 cut(s) 37, 258
DpnII GATC 2 cut(s) 35, 256
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 168
FaiI YATR 4 cut(s) 56, 137, 230, 316
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 4 cut(s) 66, 191, 270, 326
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 235, 295
Hpy188I TCNGA 4 cut(s) 15, 47, 190, 325
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 2 cut(s) 235, 295
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 35, 256
LpnPI CCDG 7 cut(s) 41, 141, 155, 180, 182, 259, 303
LweI GCATC 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 343
MalI GATC 2 cut(s) 37, 258
MboI GATC 2 cut(s) 35, 256
MboII GAAGA 2 cut(s) 76, 175
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 5 cut(s) 33, 122, 191, 212, 222
MseI TTAA 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
NdeII GATC 2 cut(s) 35, 256
PfeI GAWTC 3 cut(s) 191, 270, 326
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 35, 256
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 170
SetI ASST 1 cut(s) 174
SfaNI GCATC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 48
SsiI CCGC 2 cut(s) 145, 148
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 32, 38
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 3 cut(s) 191, 270, 326
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.