Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002491.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1571 .. 1938

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgtacagtgcatcagagtggaaagtgccaactacttttatttatggctatcaagattggatgaattatcaaggggctcaagaagctcgcaaagatatgaaggtcccatgtgagattattagagttcctgaggcgggacacttcgtattcatagacaatcccgagggtttccattcagctgttttgtacgcttgccgtagatttctgtcacctaacccagacaatgaatctttgcctgaaagtttgactgctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0008150 GO:0016298 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0042171 GO:0042592 GO:0048878 GO:0050801 GO:0052689 GO:0055081 GO:0055088 GO:0055089 GO:0055090 GO:0055091 GO:0065007 GO:0065008 GO:0070328 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko04923 map04923

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

85

Amino Acids

9.73

Weight (kDa)

4.95

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	5, 188
AfiI	CCNNNNNNNGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	86, 179
AluI	AGCT	2 cut(s)	86, 179
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	89, 150
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	89, 150
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	88, 193
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	88, 193
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	4, 187
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	4 cut(s)	48, 77, 86, 179
CviKI_1	RGCY	4 cut(s)	48, 77, 86, 179
CviQI	GTAC	2 cut(s)	4, 187
DdeI	CTNAG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	1 cut(s)	111
FaiI	YATR	4 cut(s)	45, 98, 109, 152
FaqI	GGGAC	2 cut(s)	89, 150
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	53, 80, 128, 161
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	111
LpnPI	CCDG	3 cut(s)	141, 231, 249
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	2 cut(s)	124, 157
MslI	CAYNNNNRTG	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	5, 188
RsaNI	GTAC	2 cut(s)	4, 187
RseI	CAYNNNNRTG	1 cut(s)	16
SatI	GCNGC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	88, 105, 181, 214
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	8
TasI	AATT	1 cut(s)	64
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	4 cut(s)	77, 113, 139, 240
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.