Rmu_sc0002504.1_g000005

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002504.1
N/A
Physical Location & Seq
Reverse (-)
18401 .. 19359
959 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
atgtcgaagccgaagcttgacttccctatacttgactcaactggatcggaatatcatagttgggtcagggatgttgagaaccacctcacttcaaaagggatccttcttgtaattcaggcaccaaaccctgagctcctatttgagcgtacggctacaaataatgccaccgctctcatcgtgatgagacgccacatggataaatcactccgattggagaacatcgcaatcaaggatgctagagaattatgggttgggctagaagagagatttggcaatgtcaaggactccctcctccccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtccgtagctgaatttaattcagaagctctacgcctcaaaaccatgttgggcaattttggtatcaaagcaatatcagatgaatctgcagtgctcacaagtgaggctaggaaatacttgacctccaggaaaacggttaaaaaggtactccacaaggctttggagaacatgaagtcaacagcaaacagatccactttctcttccgtccacaaggaagaagtcaccattgttagcaagctcagagatgttgaagcagtcactgtctccgtgtttgaatcagtgctgtccttcatatctgggccaaagtccaagcctagcagctggtcatcattggtttcaaagatagtgcaatcaaataaagtagcttgtgaattagaagcaaaagtaaacgaatttgcagaggtggatgctgcattaaagtcccccaagagtgcacacaaacagcttatcaatctggagtcatgcattcaagaccaagaagaaggacttgaaagcctatttaggcaattgatcaagactagagtctcccttctcaacatcctaaaccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

296

Amino Acids

33.25

Weight (kDa)

9.05

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 143 - 293 1.7e-40 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 1 cut(s) 168
AclWI GGATC 4 cut(s) 52, 94, 107, 522
AcsI RAATTY 2 cut(s) 353, 731
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 2 cut(s) 148, 486
AgsI TTSAA 9 cut(s) 93, 304, 311, 340, 590, 614, 678, 809, 830
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 464
AjuI GAANNNNNNNTTGG 4 cut(s) 234, 252, 266, 284
AluBI AGCT 8 cut(s) 16, 133, 350, 368, 577, 660, 704, 784
AluI AGCT 8 cut(s) 16, 133, 350, 368, 577, 660, 704, 784
Alw21I GWGCWC 3 cut(s) 135, 435, 775
Alw26I GTCTC 3 cut(s) 178, 607, 868
Alw44I GTGCAC 1 cut(s) 771
AlwI GGATC 4 cut(s) 52, 94, 107, 522
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 1 cut(s) 638
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 657, 749
ApoI RAATTY 2 cut(s) 353, 731
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 553
BaeGI GKGCMC 1 cut(s) 775
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 3 cut(s) 135, 435, 775
BbvI GCAGC 2 cut(s) 669, 736
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 466
BclI TGATCA 1 cut(s) 849
BcoDI GTCTC 3 cut(s) 178, 607, 868
BfaI CTAG 5 cut(s) 237, 257, 447, 654, 858
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 658, 750
BlsI GCNGC 2 cut(s) 659, 751
Bme1390I CCNGG 1 cut(s) 466
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 101, 120
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 223, 736
BoxI GACNNNNGTC 1 cut(s) 860
BpmI CTGGAG 2 cut(s) 448, 815
Bpu10I CCTNAGC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 466
BseGI GGATG 4 cut(s) 76, 238, 751, 876
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 120, 592
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 2 cut(s) 669, 736
BshFI GGCC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 3 cut(s) 135, 435, 775
BsiWI CGTACG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 745
BsmAI GTCTC 3 cut(s) 178, 607, 868
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 804
BsnI GGCC 1 cut(s) 640
Bsp1286I GDGCHC 3 cut(s) 135, 435, 775
Bsp143I GATC 4 cut(s) 44, 99, 527, 849
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 2 cut(s) 121, 591
BspLI GGNNCC 2 cut(s) 101, 120
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 4 cut(s) 52, 94, 107, 522
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 46
BssMI GATC 4 cut(s) 44, 99, 527, 849
BssNI GRCGYC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 475, 601
Bst6I CTCTTC 2 cut(s) 255, 544
BstACI GRCGYC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 129, 578
BstF5I GGATG 4 cut(s) 76, 238, 751, 876
BstKTI GATC 4 cut(s) 47, 102, 530, 852
BstMAI GTCTC 3 cut(s) 178, 607, 868
BstMBI GATC 4 cut(s) 44, 99, 527, 849
BstNI CCWGG 1 cut(s) 466
BstPAI GACNNNNGTC 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 2 cut(s) 669, 736
BstX2I RGATCY 2 cut(s) 99, 527
BstYI RGATCY 2 cut(s) 99, 527
BsuRI GGCC 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 4 cut(s) 76, 238, 751, 876
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 3 cut(s) 435, 597, 624
Cac8I GCNNGC 1 cut(s) 575
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 147, 485
CviAII CATG 4 cut(s) 193, 385, 508, 801
CviQI GTAC 2 cut(s) 147, 485
DdeI CTNAG 2 cut(s) 129, 578
DpnI GATC 4 cut(s) 46, 101, 529, 851
DpnII GATC 4 cut(s) 44, 99, 527, 849
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 255, 544
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 2 cut(s) 255, 544
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 4 cut(s) 196, 388, 511, 804
FaiI YATR 8 cut(s) 29, 57, 194, 247, 386, 509, 632, 802
FalI AAGNNNNNCTT 5 cut(s) 37, 87, 119, 810, 842
FaqI GGGAC 1 cut(s) 745
FatI CATG 4 cut(s) 192, 384, 507, 800
FbaI TGATCA 1 cut(s) 849
Fnu4HI GCNGC 2 cut(s) 658, 750
FokI GGATG 4 cut(s) 83, 245, 758, 863
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 658, 750
FspBI CTAG 5 cut(s) 237, 257, 447, 654, 858
GluI GCNGC 2 cut(s) 658, 750
GsuI CTGGAG 2 cut(s) 448, 815
HaeIII GGCC 1 cut(s) 640
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 4 cut(s) 196, 388, 511, 804
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 7 cut(s) 35, 284, 327, 422, 614, 797, 861
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 4 cut(s) 516, 547, 727, 773
Hpy188I TCNGA 5 cut(s) 49, 209, 364, 418, 581
Hpy188III TCNNGA 4 cut(s) 178, 794, 809, 853
Hpy8I GTNNAC 4 cut(s) 516, 547, 727, 773
HpyAV CCTTC 4 cut(s) 113, 637, 815, 878
HpyCH4III ACNGT 2 cut(s) 475, 601
HpyCH4V TGCA 6 cut(s) 428, 688, 737, 752, 773, 804
HpyF3I CTNAG 2 cut(s) 129, 578
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 4 cut(s) 196, 388, 511, 804
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 4 cut(s) 44, 99, 527, 849
LmnI GCTCC 2 cut(s) 138, 315
LpnPI CCDG 9 cut(s) 27, 52, 101, 141, 451, 478, 621, 646, 779
Lsp1109I GCAGC 2 cut(s) 669, 736
LweI GCATC 2 cut(s) 223, 736
MaeI CTAG 5 cut(s) 237, 257, 447, 654, 858
MaeIII GTNAC 2 cut(s) 559, 595
MalI GATC 4 cut(s) 46, 101, 529, 851
MbiI CCGCTC 1 cut(s) 170
MboI GATC 4 cut(s) 44, 99, 527, 849
MboII GAAGA 4 cut(s) 272, 531, 566, 830
MfeI CAATTG 1 cut(s) 845
MflI RGATCY 2 cut(s) 99, 527
MhlI GDGCHC 3 cut(s) 135, 435, 775
MluCI AATT 8 cut(s) 111, 242, 353, 358, 394, 710, 731, 845
MlyI GAGTC 4 cut(s) 29, 278, 806, 870
MnlI CCTC 7 cut(s) 95, 299, 302, 386, 436, 472, 733
Mph1103I ATGCAT 1 cut(s) 806
MseI TTAA 3 cut(s) 357, 477, 755
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 466
MunI CAATTG 1 cut(s) 845
Mva1269I GAATGC 1 cut(s) 804
MvaI CCWGG 1 cut(s) 466
NdeII GATC 4 cut(s) 44, 99, 527, 849
NlaIII CATG 4 cut(s) 196, 388, 511, 804
NlaIV GGNNCC 2 cut(s) 101, 120
NmuCI GTSAC 2 cut(s) 559, 595
NsiI ATGCAT 1 cut(s) 806
PctI GAATGC 1 cut(s) 804
PfeI GAWTC 3 cut(s) 327, 422, 614
Pfl23II CGTACG 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 2 cut(s) 659, 751
PleI GAGTC 4 cut(s) 29, 278, 805, 869
PpsI GAGTC 4 cut(s) 29, 278, 805, 869
PshAI GACNNNNGTC 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 101, 120
PspPI GGNCC 1 cut(s) 638
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 99, 527
PvuII CAGCTG 1 cut(s) 660
RsaI GTAC 2 cut(s) 148, 486
RsaNI GTAC 2 cut(s) 147, 485
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 357, 477, 755
SatI GCNGC 2 cut(s) 658, 750
Sau3AI GATC 4 cut(s) 44, 99, 527, 849
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 4 cut(s) 29, 278, 806, 870
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 3 cut(s) 135, 435, 775
SfaNI GCATC 2 cut(s) 223, 736
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 8 cut(s) 111, 242, 353, 358, 394, 710, 731, 845
SsiI CCGC 1 cut(s) 168
SspMI CTAG 5 cut(s) 237, 257, 447, 654, 858
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 475, 601
TaqI TCGA 1 cut(s) 5
TasI AATT 8 cut(s) 111, 242, 353, 358, 394, 710, 731, 845
TfiI GAWTC 3 cut(s) 327, 422, 614
Tru1I TTAA 3 cut(s) 357, 477, 755
Tru9I TTAA 3 cut(s) 357, 477, 755
TscAI CASTG 3 cut(s) 435, 604, 624
TseFI GTSAC 2 cut(s) 559, 595
TseI GCWGC 2 cut(s) 657, 749
Tsp45I GTSAC 2 cut(s) 559, 595
TspDTI ATGAA 3 cut(s) 435, 524, 619
TspGWI ACGGA 3 cut(s) 334, 532, 595
TspRI CASTG 3 cut(s) 435, 604, 624
VneI GTGCAC 1 cut(s) 771
XapI RAATTY 2 cut(s) 353, 731
XspI CTAG 5 cut(s) 237, 257, 447, 654, 858
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.