Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21583 .. 24441

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggtgcaccaaagattggtggtgtacagtgtggcggaagattttccggtggaggttgctagcgaggtgtgttcagcggtgatgccagcggtgagtgtccgccagttgggtttgccgctggtggaggctagctgtgtcattggagatgctcctggagatcagcggaataaagtgctacggtccggcggagcctctccggtggtgaagttcagcggaggccgcccggtggtgcagtctagcggagactcataccggctagcggaggccttggacggcggaggggtgaagagttggtggtcggcggaggttcaaatctcagcggaggatctgatcaatgctagtgtggcggaggttggccagcggagcggaggtgttgcagctggcggagctgcaagttgggcggcatttggaactcagcggaggggagaagaagaagaagagtttggcggaggtgtttgggtgcccagagcaaatctctggctcggctcgcagcgtgccctctccctccacactaccaccccttttgtttactcttccgccacctcctctccggccacctataaccgccttcctccactggccacgtcgttctcggccagcctctctaaaaccacggagtttgtgatctccaaggttgatgatatgatgaactgggaccagtgcggctccatcttacccataaccttcagcctcgcttgctgcgccgtcgagatgatgcacatcggagctagccgttatgatttggactacttcagaatcattttccggcccagcccacgccaatccgattgcatgatcgtcgtcggagggtttggagtgcggtggtggcggtcgtgctctgtattggggtggtcggtcggaattgctggtgtagagagaaaagagaagagtgtgattagaagaaaaaaggagacgaggcgtcggaggaaggtgttggggaggatcttgattaggtggacgatcgggtcaatggagtgggtagtggcagtggccgcctgcaatgactcggatttgggaggcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

341

Amino Acids

36.83

Weight (kDa)

8.62

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccBSI	CCGCTC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	333, 950
AcoI	YGGCCR	5 cut(s)	355, 552, 579, 594, 990
AcuI	CTGAAG	2 cut(s)	670, 736
AcyI	GRCGYC	1 cut(s)	919
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	4 cut(s)	16, 106, 226, 259
AgsI	TTSAA	1 cut(s)	311
AhdI	GACNNNNNGTC	1 cut(s)	918
AjiI	CACGTC	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	4 cut(s)	132, 380, 389, 728
AluI	AGCT	4 cut(s)	132, 380, 389, 728
Alw21I	GWGCWC	2 cut(s)	9, 839
Alw26I	GTCTC	2 cut(s)	237, 905
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	333, 950
AoxI	GGCC	8 cut(s)	217, 264, 355, 552, 579, 594, 767, 990
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	4 cut(s)	377, 389, 490, 699
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	180, 655, 768
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	4 cut(s)	91, 103, 214, 295
AsuNHI	GCTAGC	4 cut(s)	59, 128, 256, 728
AvaII	GGWCC	2 cut(s)	180, 655
BaeGI	GKGCMC	3 cut(s)	9, 465, 499
BalI	TGGCCA	2 cut(s)	357, 581
BanI	GGYRCC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	9, 839
BbvI	GCAGC	4 cut(s)	376, 389, 502, 686
BccI	CCATC	1 cut(s)	677
BceAI	ACGGC	3 cut(s)	289, 689, 717
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	1 cut(s)	153
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	237, 905
BfaI	CTAG	6 cut(s)	60, 129, 237, 257, 339, 729
BisI	GCNGC	9 cut(s)	116, 220, 378, 390, 402, 491, 664, 700, 993
BlsI	GCNGC	9 cut(s)	117, 221, 379, 391, 403, 492, 665, 701, 994
Bme1390I	CCNGG	2 cut(s)	153, 224
Bme18I	GGWCC	2 cut(s)	180, 655
BmeRI	GACNNNNNGTC	1 cut(s)	918
BmgBI	CACGTC	1 cut(s)	585
BmgT120I	GGNCC	3 cut(s)	180, 655, 768
BmiI	GGNNCC	4 cut(s)	190, 462, 656, 667
BmrFI	CCNGG	2 cut(s)	153, 224
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	3 cut(s)	72, 136, 705
BmtI	GCTAGC	4 cut(s)	63, 132, 260, 732
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BpmI	CTGGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	919
BsaJI	CCNNGG	3 cut(s)	267, 612, 630
BsaWI	WCCGGW	2 cut(s)	46, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	355, 385, 532, 562
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 106, 226, 259
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	4 cut(s)	103, 582, 656, 658
Bse3DI	GCAATG	1 cut(s)	1006
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	267, 612, 630
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	4 cut(s)	16, 106, 226, 259
BseMI	GCAATG	1 cut(s)	1006
BseMII	CTCAG	2 cut(s)	330, 428
BseNI	ACTGG	4 cut(s)	103, 582, 656, 658
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	3 cut(s)	9, 465, 499
BseXI	GCAGC	4 cut(s)	376, 389, 502, 686
BseYI	CCCAGC	1 cut(s)	770
BsgI	GTGCAG	1 cut(s)	251
Bsh1285I	CGRYCG	3 cut(s)	833, 858, 963
BshFI	GGCC	8 cut(s)	219, 266, 357, 554, 581, 596, 769, 992
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	3 cut(s)	833, 858, 963
BsiHKAI	GWGCWC	2 cut(s)	9, 839
BsiSI	CCGG	7 cut(s)	47, 183, 197, 224, 253, 551, 766
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	4 cut(s)	16, 106, 226, 259
BsmAI	GTCTC	2 cut(s)	237, 905
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	668
BsnI	GGCC	8 cut(s)	219, 266, 357, 554, 581, 596, 769, 992
Bsp1286I	GDGCHC	4 cut(s)	9, 465, 499, 839
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
BspANI	GGCC	8 cut(s)	219, 266, 357, 554, 581, 596, 769, 992
BspCNI	CTCAG	2 cut(s)	329, 427
BspLI	GGNNCC	4 cut(s)	190, 462, 656, 667
BspOI	GCTAGC	4 cut(s)	63, 132, 260, 732
BspPI	GGATC	2 cut(s)	333, 950
BspT107I	GGYRCC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	1006
BsrFI	RCCGGY	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	4 cut(s)	103, 582, 656, 658
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	267, 612, 630
BssMI	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
BssNI	GRCGYC	1 cut(s)	919
BssT1I	CCWWGG	2 cut(s)	267, 630
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	29, 180
Bst6I	CTCTTC	4 cut(s)	281, 432, 538, 881
BstACI	GRCGYC	1 cut(s)	919
BstAUI	TGTACA	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	316, 414
BstDSI	CCRYGG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	7 cut(s)	160, 328, 333, 627, 798, 945, 963
BstMAI	GTCTC	2 cut(s)	237, 905
BstMBI	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
BstMCI	CGRYCG	3 cut(s)	833, 858, 963
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	151, 222
BstSLI	GKGCMC	3 cut(s)	9, 465, 499
BstV1I	GCAGC	4 cut(s)	376, 389, 502, 686
BstX2I	RGATCY	2 cut(s)	325, 942
BstYI	RGATCY	2 cut(s)	325, 942
BsuRI	GGCC	8 cut(s)	219, 266, 357, 554, 581, 596, 769, 992
BtgI	CCRYGG	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	4 cut(s)	34, 575, 665, 993
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	180, 655, 768
CpoI	CGGWCCG	1 cut(s)	180
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	4 cut(s)	505, 540, 601, 636
CspI	CGGWCCG	1 cut(s)	180
CviAII	CATG	1 cut(s)	793
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	316, 414
DpnI	GATC	7 cut(s)	159, 327, 332, 626, 797, 944, 962
DpnII	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
DrdI	GACNNNNNNGTC	1 cut(s)	964
DriI	GACNNNNNGTC	1 cut(s)	918
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	5 cut(s)	355, 552, 579, 594, 990
Eam1104I	CTCTTC	4 cut(s)	281, 432, 538, 881
Eam1105I	GACNNNNNGTC	1 cut(s)	918
EarI	CTCTTC	4 cut(s)	281, 432, 538, 881
EciI	GGCGGA	9 cut(s)	50, 89, 201, 291, 317, 362, 399, 462, 526
Eco130I	CCWWGG	2 cut(s)	267, 630
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	180, 655
Eco57I	CTGAAG	2 cut(s)	670, 736
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	267, 630
ErhI	CCWWGG	2 cut(s)	267, 630
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	1 cut(s)	796
FaiI	YATR	6 cut(s)	250, 561, 644, 680, 738, 794
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	1 cut(s)	792
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	9 cut(s)	116, 220, 378, 390, 402, 491, 664, 700, 993
Fsp4HI	GCNGC	9 cut(s)	116, 220, 378, 390, 402, 491, 664, 700, 993
FspBI	CTAG	6 cut(s)	60, 129, 237, 257, 339, 729
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	9 cut(s)	116, 220, 378, 390, 402, 491, 664, 700, 993
GsaI	CCCAGC	1 cut(s)	774
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	8 cut(s)	219, 266, 357, 554, 581, 596, 769, 992
HapII	CCGG	7 cut(s)	47, 183, 197, 224, 253, 551, 766
HgaI	GACGC	1 cut(s)	908
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	919
Hin1II	CATG	1 cut(s)	796
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	3 cut(s)	245, 756, 1004
HpaII	CCGG	7 cut(s)	47, 183, 197, 224, 253, 551, 766
HphI	GGTGA	4 cut(s)	91, 103, 214, 295
Hpy166II	GTNNAC	4 cut(s)	7, 25, 529, 957
Hpy188I	TCNGA	8 cut(s)	330, 725, 755, 787, 806, 860, 924, 1009
Hpy188III	TCNNGA	2 cut(s)	709, 946
Hpy8I	GTNNAC	4 cut(s)	7, 25, 529, 957
Hpy99I	CGWCG	5 cut(s)	589, 710, 803, 806, 924
HpyAV	CCTTC	3 cut(s)	578, 694, 922
HpyCH4III	ACNGT	2 cut(s)	29, 180
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	7 cut(s)	7, 232, 377, 392, 718, 792, 999
HpyF3I	CTNAG	2 cut(s)	316, 414
HpySE526I	ACGT	1 cut(s)	584
Hsp92I	GRCGYC	1 cut(s)	919
Hsp92II	CATG	1 cut(s)	796
HspAI	GCGC	1 cut(s)	702
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
LmnI	GCTCC	6 cut(s)	154, 188, 363, 386, 671, 725
Lsp1109I	GCAGC	4 cut(s)	376, 389, 502, 686
LweI	GCATC	3 cut(s)	72, 136, 705
MaeI	CTAG	6 cut(s)	60, 129, 237, 257, 339, 729
MaeII	ACGT	1 cut(s)	584
MalI	GATC	7 cut(s)	159, 327, 332, 626, 797, 944, 962
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
MboII	GAAGA	9 cut(s)	50, 298, 440, 443, 446, 449, 525, 898, 912
MflI	RGATCY	2 cut(s)	325, 942
MhlI	GDGCHC	4 cut(s)	9, 465, 499, 839
MlsI	TGGCCA	2 cut(s)	357, 581
MluCI	AATT	1 cut(s)	861
MluNI	TGGCCA	2 cut(s)	357, 581
MlyI	GAGTC	2 cut(s)	239, 998
MmeI	TCCRAC	3 cut(s)	784, 838, 902
Mox20I	TGGCCA	2 cut(s)	357, 581
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	2 cut(s)	357, 581
Msp20I	TGGCCA	2 cut(s)	357, 581
MspA1I	CMGCKG	9 cut(s)	77, 89, 118, 163, 213, 320, 361, 380, 418
MspI	CCGG	7 cut(s)	47, 183, 197, 224, 253, 551, 766
MspR9I	CCNGG	2 cut(s)	153, 224
MvaI	CCWGG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
NheI	GCTAGC	4 cut(s)	59, 128, 256, 728
NlaIII	CATG	1 cut(s)	796
NlaIV	GGNNCC	4 cut(s)	190, 462, 656, 667
NmeAIII	GCCGAG	2 cut(s)	462, 572
PceI	AGGCCT	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	756
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	9 cut(s)	117, 221, 379, 391, 403, 492, 665, 701, 994
Ple19I	CGATCG	1 cut(s)	963
PleI	GAGTC	2 cut(s)	239, 998
PpsI	GAGTC	2 cut(s)	239, 998
Psp6I	CCWGG	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	4 cut(s)	190, 462, 656, 667
PspPI	GGNCC	3 cut(s)	180, 655, 768
PsuI	RGATCY	2 cut(s)	325, 942
PvuI	CGATCG	1 cut(s)	963
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
Rsr2I	CGGWCCG	1 cut(s)	180
RsrII	CGGWCCG	1 cut(s)	180
SatI	GCNGC	9 cut(s)	116, 220, 378, 390, 402, 491, 664, 700, 993
Sau3AI	GATC	7 cut(s)	157, 325, 330, 624, 795, 942, 960
Sau96I	GGNCC	3 cut(s)	180, 655, 768
SchI	GAGTC	2 cut(s)	239, 998
ScrFI	CCNGG	2 cut(s)	153, 224
SduI	GDGCHC	4 cut(s)	9, 465, 499, 839
SfaNI	GCATC	3 cut(s)	72, 136, 705
SinI	GGWCC	2 cut(s)	180, 655
Sse9I	AATT	1 cut(s)	861
SseBI	AGGCCT	1 cut(s)	266
SspMI	CTAG	6 cut(s)	60, 129, 237, 257, 339, 729
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	151, 222
StyI	CCWWGG	2 cut(s)	267, 630
TaaI	ACNGT	2 cut(s)	29, 180
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	708
TaqII	GACCGA	1 cut(s)	844
TasI	AATT	1 cut(s)	861
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	5 cut(s)	118, 222, 404, 666, 995
TfiI	GAWTC	1 cut(s)	756
TscAI	CASTG	4 cut(s)	34, 582, 665, 993
TseI	GCWGC	4 cut(s)	377, 389, 490, 699
TspDTI	ATGAA	1 cut(s)	662
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	4 cut(s)	34, 582, 665, 993
Van91I	CCANNNNNTGG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	2 cut(s)	180, 655
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	6 cut(s)	60, 129, 237, 257, 339, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.