Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002509.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37535 .. 43113

Gene Structure 5579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atggagtcttggcagagcagaaaaggcgtgatcttgatggggattctattggtgagctttgtggggcgaatcgcgtcgctatcggtgacggtgaacgacatggaatgcgtgtacgagtatgtgctctacgaagacgacgtcgtttcggggaacttcgtggtggtcgaccatgatatcttctgggccagcgatcatccgggtctcgatttaattgtgacatctcctgggggtaatacagtgcacacttcaaagggaacatctggagataagtttgagtttaaggccccaaggagtggaatgtacaagttctgttttcacaatccctactcaactccagaaacggtttcattcaatatacatgtcggccatattcctactgagcacaacattgccaaggatgaacatctagaccctattaatgtgaagatagctgagcttagagaggcattggagtcagttacattggaacaaaagtacttgaaagcacgtgatgctcgccatcgtcatacaaatgagagcacaagaaagcgtgttgtgctctacacagtgggagagtacatcatgctagttgctgcaagtgctttacaagttgtatacatccgccgcctctttagcaaatcaattggatataatcgggtgacatctcctgggggtaatacagtgcacacttcaaagggaacatctggagataagtttgagtttaaggccccaaggagtggaatgtacaagttctgttttcacaatccctactcaactccagaaacggtttcattcaatatacatgtcggccatattcctactgagcacaacattgccaaggatgaacatctagaccctattaatgtgaagatagctgagcttagagaggcattggagtcagttacattggaacaaaagtacttgaaagcacgtgatgctcgccatcgtcatacaaatgagagcacaagaaagcgtgttgtgctctacacagtgggagagtacatcatgctagttgctgcaagtgctttacaagttgtatacatccgccgcctctttagcaaatcaattggatataatcggaggcttgttggtgaatctcagtgttgtgcagttatacctgaccccggtagtgcagtgctcatatcggatcccaagaaaccagccagaggacatgagcttgcccacgcagcaacaaaaaggttcatgttcaggaaaggccaaggcaaacagcatgtctgtaaggtgttcgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

411

Amino Acids

46.32

Weight (kDa)

9.08

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	29 - 204	4.9e-47	emp24/gp25L/p24 family/GOLD
EMP24_GP25L	PF01105	213 - 345	1.5e-39	emp24/gp25L/p24 family/GOLD
Rad51	PF08423	366 - 410	1.2e-08	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB7I	CCANNNNNTGG	2 cut(s)	293, 716
AccI	GTMKAC	3 cut(s)	165, 594, 1017
AccII	CGCG	1 cut(s)	74
AciI	CCGC	4 cut(s)	601, 604, 1024, 1027
AclWI	GGATC	2 cut(s)	1121, 1134
AcoI	YGGCCR	2 cut(s)	364, 787
AcvI	CACGTG	2 cut(s)	488, 911
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	7 cut(s)	113, 302, 476, 557, 725, 899, 980
AfiI	CCNNNNNNNGG	4 cut(s)	293, 716, 1103, 1145
AflIII	ACRYGT	2 cut(s)	358, 781
AgsI	TTSAA	6 cut(s)	249, 352, 481, 672, 775, 904
AjnI	CCWGG	2 cut(s)	223, 646
AluBI	AGCT	6 cut(s)	57, 431, 436, 854, 859, 1156
AluI	AGCT	6 cut(s)	57, 431, 436, 854, 859, 1156
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	2 cut(s)	239, 662
AlwI	GGATC	2 cut(s)	1121, 1134
AoxI	GGCC	6 cut(s)	183, 282, 364, 705, 787, 1195
ApaLI	GTGCAC	2 cut(s)	239, 662
ApeKI	GCWGC	3 cut(s)	572, 995, 1166
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 1197, 1229
AseI	ATTAAT	2 cut(s)	417, 840
AspS9I	GGNCC	3 cut(s)	183, 283, 706
AsuC2I	CCSGG	2 cut(s)	198, 1104
AsuHPI	GGTGA	5 cut(s)	64, 97, 103, 649, 1082
AsuII	TTCGAA	1 cut(s)	1227
BaeGI	GKGCMC	2 cut(s)	243, 666
BamHI	GGATCC	1 cut(s)	1126
BbrPI	CACGTG	2 cut(s)	488, 911
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	559, 982, 1178
BccI	CCATC	3 cut(s)	31, 507, 930
BciT130I	CCWGG	2 cut(s)	225, 648
BcnI	CCSGG	2 cut(s)	198, 1104
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	4 cut(s)	407, 566, 830, 989
BisI	GCNGC	5 cut(s)	573, 604, 996, 1027, 1167
BlpI	GCTNAGC	2 cut(s)	432, 855
BlsI	GCNGC	5 cut(s)	574, 605, 997, 1028, 1168
BmcAI	AGTACT	2 cut(s)	476, 899
Bme1390I	CCNGG	4 cut(s)	198, 225, 648, 1104
BmgT120I	GGNCC	3 cut(s)	183, 283, 706
BmiI	GGNNCC	3 cut(s)	285, 708, 1128
BmrFI	CCNGG	4 cut(s)	198, 225, 648, 1104
BmsI	GCATC	2 cut(s)	481, 904
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	4 cut(s)	282, 318, 705, 741
Bpu1102I	GCTNAGC	2 cut(s)	432, 855
Bpu14I	TTCGAA	1 cut(s)	1227
BpuMI	CCSGG	2 cut(s)	198, 1104
BsaAI	YACGTR	2 cut(s)	488, 911
BsaBI	GATNNNNATC	2 cut(s)	402, 825
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	8 cut(s)	224, 287, 393, 647, 710, 816, 1102, 1198
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 716, 1103, 1145
Bse3DI	GCAATG	2 cut(s)	387, 810
Bse8I	GATNNNNATC	2 cut(s)	402, 825
BseBI	CCWGG	2 cut(s)	225, 648
BseDI	CCNNGG	8 cut(s)	224, 287, 393, 647, 710, 816, 1102, 1198
BseGI	GGATG	5 cut(s)	193, 403, 597, 826, 1020
BseJI	GATNNNNATC	2 cut(s)	402, 825
BseLI	CCNNNNNNNGG	4 cut(s)	293, 716, 1103, 1145
BseMI	GCAATG	2 cut(s)	387, 810
BseMII	CTCAG	5 cut(s)	369, 423, 792, 846, 1091
BseSI	GKGCMC	2 cut(s)	243, 666
BseXI	GCAGC	3 cut(s)	559, 982, 1178
BsgI	GTGCAG	2 cut(s)	1107, 1131
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	6 cut(s)	185, 284, 366, 707, 789, 1197
BsiSI	CCGG	2 cut(s)	197, 1104
BslI	CCNNNNNNNGG	4 cut(s)	293, 716, 1103, 1145
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	6 cut(s)	185, 284, 366, 707, 789, 1197
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	1227
Bsp1407I	TGTACA	2 cut(s)	300, 723
Bsp143I	GATC	3 cut(s)	30, 190, 1126
Bsp1720I	GCTNAGC	2 cut(s)	432, 855
BspACI	CCGC	4 cut(s)	601, 604, 1024, 1027
BspANI	GGCC	6 cut(s)	185, 284, 366, 707, 789, 1197
BspCNI	CTCAG	5 cut(s)	370, 424, 793, 847, 1090
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	285, 708, 1128
BspPI	GGATC	2 cut(s)	1121, 1134
BspT104I	TTCGAA	1 cut(s)	1227
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	387, 810
BsrGI	TGTACA	2 cut(s)	300, 723
BssECI	CCNNGG	8 cut(s)	224, 287, 393, 647, 710, 816, 1102, 1198
BssMI	GATC	3 cut(s)	30, 190, 1126
BssNAI	GTATAC	2 cut(s)	595, 1018
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	5 cut(s)	287, 393, 710, 816, 1198
Bst1107I	GTATAC	2 cut(s)	595, 1018
Bst2UI	CCWGG	2 cut(s)	225, 648
Bst4CI	ACNGT	7 cut(s)	91, 238, 343, 547, 661, 766, 970
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	491, 914
BstAUI	TGTACA	2 cut(s)	300, 723
BstBAI	YACGTR	2 cut(s)	488, 911
BstBI	TTCGAA	1 cut(s)	1227
BstC8I	GCNNGC	4 cut(s)	187, 496, 919, 1158
BstDEI	CTNAG	7 cut(s)	378, 432, 437, 801, 855, 860, 1077
BstF5I	GGATG	5 cut(s)	193, 403, 597, 826, 1020
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	33, 193, 1129
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	30, 190, 1126
BstNI	CCWGG	2 cut(s)	225, 648
BstNSI	RCATGY	3 cut(s)	362, 785, 1214
BstSCI	CCNGG	4 cut(s)	196, 223, 646, 1102
BstSLI	GKGCMC	2 cut(s)	243, 666
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	559, 982, 1178
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	1126
BstYI	RGATCY	1 cut(s)	1126
BstZ17I	GTATAC	2 cut(s)	595, 1018
BsuRI	GGCC	6 cut(s)	185, 284, 366, 707, 789, 1197
BtsCI	GGATG	5 cut(s)	193, 403, 597, 826, 1020
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	6 cut(s)	243, 552, 666, 975, 1085, 1119
Cac8I	GCNNGC	4 cut(s)	187, 496, 919, 1158
Cfr13I	GGNCC	3 cut(s)	183, 283, 706
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	7 cut(s)	112, 301, 475, 556, 724, 898, 979
CviAII	CATG	9 cut(s)	100, 170, 359, 562, 782, 985, 1151, 1183, 1211
CviQI	GTAC	7 cut(s)	112, 301, 475, 556, 724, 898, 979
DdeI	CTNAG	7 cut(s)	378, 432, 437, 801, 855, 860, 1077
DpnI	GATC	3 cut(s)	32, 192, 1128
DpnII	GATC	3 cut(s)	30, 190, 1126
EaeI	YGGCCR	2 cut(s)	364, 787
EciI	GGCGGA	2 cut(s)	590, 1013
Eco130I	CCWWGG	5 cut(s)	287, 393, 710, 816, 1198
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	175
Eco72I	CACGTG	2 cut(s)	488, 911
EcoO109I	RGGNCCY	2 cut(s)	283, 706
EcoRII	CCWGG	2 cut(s)	223, 646
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	5 cut(s)	287, 393, 710, 816, 1198
ErhI	CCWWGG	5 cut(s)	287, 393, 710, 816, 1198
FaeI	CATG	9 cut(s)	103, 173, 362, 565, 785, 988, 1154, 1186, 1214
FatI	CATG	9 cut(s)	99, 169, 358, 561, 781, 984, 1150, 1182, 1210
FblI	GTMKAC	3 cut(s)	165, 594, 1017
Fnu4HI	GCNGC	5 cut(s)	573, 604, 996, 1027, 1167
FokI	GGATG	5 cut(s)	180, 410, 584, 833, 1007
Fsp4HI	GCNGC	5 cut(s)	573, 604, 996, 1027, 1167
FspBI	CTAG	4 cut(s)	407, 566, 830, 989
GluI	GCNGC	5 cut(s)	573, 604, 996, 1027, 1167
GsuI	CTGGAG	4 cut(s)	282, 318, 705, 741
HaeIII	GGCC	6 cut(s)	185, 284, 366, 707, 789, 1197
HapII	CCGG	2 cut(s)	197, 1104
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	9 cut(s)	103, 173, 362, 565, 785, 988, 1154, 1186, 1214
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	6 cut(s)	5, 43, 69, 452, 875, 1073
HpaII	CCGG	2 cut(s)	197, 1104
HphI	GGTGA	5 cut(s)	64, 97, 103, 649, 1082
Hpy166II	GTNNAC	7 cut(s)	94, 112, 166, 241, 595, 664, 1018
Hpy188I	TCNGA	2 cut(s)	1059, 1126
Hpy188III	TCNNGA	9 cut(s)	34, 203, 261, 335, 407, 684, 758, 830, 1189
Hpy8I	GTNNAC	7 cut(s)	94, 112, 166, 241, 595, 664, 1018
Hpy99I	CGWCG	3 cut(s)	79, 140, 143
HpyCH4III	ACNGT	7 cut(s)	91, 238, 343, 547, 661, 766, 970
HpyCH4IV	ACGT	3 cut(s)	138, 487, 910
HpyCH4V	TGCA	6 cut(s)	241, 575, 664, 998, 1088, 1112
HpyF3I	CTNAG	7 cut(s)	378, 432, 437, 801, 855, 860, 1077
HpySE526I	ACGT	3 cut(s)	138, 487, 910
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	9 cut(s)	103, 173, 362, 565, 785, 988, 1154, 1186, 1214
Kzo9I	GATC	3 cut(s)	30, 190, 1126
Lsp1109I	GCAGC	3 cut(s)	559, 982, 1178
LweI	GCATC	2 cut(s)	481, 904
MaeI	CTAG	4 cut(s)	407, 566, 830, 989
MaeII	ACGT	3 cut(s)	138, 487, 910
MaeIII	GTNAC	5 cut(s)	85, 214, 457, 637, 880
MalI	GATC	3 cut(s)	32, 192, 1128
MboI	GATC	3 cut(s)	30, 190, 1126
MboII	GAAGA	4 cut(s)	143, 169, 436, 859
MfeI	CAATTG	2 cut(s)	621, 1044
MflI	RGATCY	1 cut(s)	1126
MluCI	AATT	3 cut(s)	210, 621, 1044
MlyI	GAGTC	3 cut(s)	14, 461, 884
MnlI	CCTC	6 cut(s)	436, 617, 859, 1040, 1053, 1139
MseI	TTAA	5 cut(s)	209, 279, 417, 702, 840
MslI	CAYNNNNRTG	2 cut(s)	510, 933
MspI	CCGG	2 cut(s)	197, 1104
MspR9I	CCNGG	4 cut(s)	198, 225, 648, 1104
MunI	CAATTG	2 cut(s)	621, 1044
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	2 cut(s)	225, 648
MvnI	CGCG	1 cut(s)	74
NciI	CCSGG	2 cut(s)	198, 1104
NdeII	GATC	3 cut(s)	30, 190, 1126
NlaIII	CATG	9 cut(s)	103, 173, 362, 565, 785, 988, 1154, 1186, 1214
NlaIV	GGNNCC	3 cut(s)	285, 708, 1128
NmuCI	GTSAC	3 cut(s)	85, 214, 637
NspI	RCATGY	3 cut(s)	362, 785, 1214
NspV	TTCGAA	1 cut(s)	1227
PciI	ACATGT	2 cut(s)	358, 781
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 162
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	43, 69, 1073
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	2 cut(s)	293, 716
PkrI	GCNGC	5 cut(s)	574, 605, 997, 1028, 1168
PleI	GAGTC	3 cut(s)	13, 460, 883
PmaCI	CACGTG	2 cut(s)	488, 911
PmlI	CACGTG	2 cut(s)	488, 911
PpsI	GAGTC	3 cut(s)	13, 460, 883
Ppu21I	YACGTR	2 cut(s)	488, 911
PscI	ACATGT	2 cut(s)	358, 781
PshBI	ATTAAT	2 cut(s)	417, 840
Psp6I	CCWGG	2 cut(s)	223, 646
PspCI	CACGTG	2 cut(s)	488, 911
PspGI	CCWGG	2 cut(s)	223, 646
PspN4I	GGNNCC	3 cut(s)	285, 708, 1128
PspPI	GGNCC	3 cut(s)	183, 283, 706
PsuI	RGATCY	1 cut(s)	1126
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	7 cut(s)	113, 302, 476, 557, 725, 899, 980
RsaNI	GTAC	7 cut(s)	112, 301, 475, 556, 724, 898, 979
RseI	CAYNNNNRTG	2 cut(s)	510, 933
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	5 cut(s)	209, 279, 417, 702, 840
SatI	GCNGC	5 cut(s)	573, 604, 996, 1027, 1167
Sau3AI	GATC	3 cut(s)	30, 190, 1126
Sau96I	GGNCC	3 cut(s)	183, 283, 706
ScaI	AGTACT	2 cut(s)	476, 899
SchI	GAGTC	3 cut(s)	14, 461, 884
ScrFI	CCNGG	4 cut(s)	198, 225, 648, 1104
SfaNI	GCATC	2 cut(s)	481, 904
SfuI	TTCGAA	1 cut(s)	1227
SmiMI	CAYNNNNRTG	2 cut(s)	510, 933
Sse9I	AATT	3 cut(s)	210, 621, 1044
SsiI	CCGC	4 cut(s)	601, 604, 1024, 1027
SspMI	CTAG	4 cut(s)	407, 566, 830, 989
StyD4I	CCNGG	4 cut(s)	196, 223, 646, 1102
StyI	CCWWGG	5 cut(s)	287, 393, 710, 816, 1198
TaaI	ACNGT	7 cut(s)	91, 238, 343, 547, 661, 766, 970
TaiI	ACGT	3 cut(s)	141, 490, 913
TaqI	TCGA	3 cut(s)	165, 204, 1227
TasI	AATT	3 cut(s)	210, 621, 1044
TatI	WGTACW	6 cut(s)	300, 474, 555, 723, 897, 978
TauI	GCSGC	2 cut(s)	606, 1029
TfiI	GAWTC	3 cut(s)	43, 69, 1073
Tru1I	TTAA	5 cut(s)	209, 279, 417, 702, 840
Tru9I	TTAA	5 cut(s)	209, 279, 417, 702, 840
TscAI	CASTG	6 cut(s)	243, 552, 666, 975, 1085, 1119
TseFI	GTSAC	3 cut(s)	85, 214, 637
TseI	GCWGC	3 cut(s)	572, 995, 1166
Tsp45I	GTSAC	3 cut(s)	85, 214, 637
TspDTI	ATGAA	5 cut(s)	336, 414, 759, 837, 1171
TspRI	CASTG	6 cut(s)	243, 552, 666, 975, 1085, 1119
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	2 cut(s)	293, 716
VneI	GTGCAC	2 cut(s)	239, 662
VspI	ATTAAT	2 cut(s)	417, 840
XbaI	TCTAGA	2 cut(s)	406, 829
XceI	RCATGY	3 cut(s)	362, 785, 1214
XmiI	GTMKAC	3 cut(s)	165, 594, 1017
XspI	CTAG	4 cut(s)	407, 566, 830, 989
ZraI	GACGTC	1 cut(s)	139
ZrmI	AGTACT	2 cut(s)	476, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.