Rmu_sc0002520.1_g000006
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002520.1
OG0006216
Physical Location & Seq
Forward (+)
32256 .. 35367
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1356 bp
atgagttggagccacccagatatttcattggaagaattcatgaaactggttaaagggttcgtcgatattctgattctgctttctgggtaccaatcctctggtcgtcttgctcactgggactcccagaatatcaagaaggccttccaatggggcctcttcttcgaaaatagctttagcagctctgatgattatgtggactctgtgatggaacttgatggggctatttctgaaatgacatctgctgcttctttccccaagggccttgcacatatgtcaactgctactcttgctaccgcgcggcgttttgtgttagagcatctcatccatagtttacctttgagagatgcgcatctgcgagctttgctgacggcgactgtggagatggatcttgaggagctatcggaaagtgagcatgattttcttaatgtgtatctcaacaagttgaagctggagaatacagtcaatacaccaattcagcaaggcattgagtcagttagaaagtttggagattgcggtggtaatggtttgacgaaatacgcggttcaagggctcttgaagaggtggtctgtggtttctttgatatcaacggttgagtcaggcttagacgttctttctcgaagtgtcagacatagcagttggagtgagtttgatgataacttattgaaagagcagctggagcatgaaaatactccagtgactgtagactggttggttggtgctctgacatggaaccgctggaaatcaaatagcctctcttattttcttgataagagaactgttcaattagtctccggtgccagcatggtattttctacccctaagattcaatgggtacaaacttttcaacggttgaacttcagtgatttagcaggaggcagtgataatggtttgtgcgaaacaattgagctcatgttactaggatgcattgcaagcagatggacttctgtaattgagcatttggtgtcagtttcttatgattcccgcactgttttggagcaatatcacgaagtgtgcaacttactccacggaagatctactactcttagatctaaacaggaagcaatcagccaggcaactgacattcttgagtatctgagtggaatgctggatggccaggtgcatctgttatggaagatatgcccagctcttggagccgttgcaattccatcctggtcacctttgtttagactttatttgagtgaaattcagattcaagtcaggggagatctttcaacaatgagatgttgtgactgtgctcataataggaaggagcacactgactgtgaacttgctcagagaatttggtgcctttatgtttttcatgtttatggctctcgtctaattgcccattgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

451

Amino Acids

50.92

Weight (kDa)

5.71

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 128 2.5e-07 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 3 cut(s) 87, 794, 1305
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 702
AccII CGCG 3 cut(s) 296, 298, 539
AciI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 1111
AcsI RAATTY 3 cut(s) 35, 1203, 1299
AcuI CTGAAG 1 cut(s) 841
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 2 cut(s) 89, 834
AfiI CCNNNNNNNGG 2 cut(s) 147, 1148
AjnI CCWGG 3 cut(s) 1068, 1113, 1169
AluBI AGCT 8 cut(s) 171, 180, 359, 397, 448, 673, 907, 1145
AluI AGCT 8 cut(s) 171, 180, 359, 397, 448, 673, 907, 1145
Alw21I GWGCWC 4 cut(s) 721, 909, 1258, 1275
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 1 cut(s) 393
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 4 cut(s) 138, 151, 259, 1111
ApeKI GCWGC 3 cut(s) 177, 242, 670
ApoI RAATTY 3 cut(s) 35, 1203, 1299
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 298, 349
AspS9I GGNCC 2 cut(s) 151, 259
AsuHPI GGTGA 1 cut(s) 1167
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 3 cut(s) 87, 794, 1305
BanII GRGCYC 2 cut(s) 552, 909
BarI GAAGNNNNNNTAC 2 cut(s) 1021, 1053
Bbv12I GWGCWC 4 cut(s) 721, 909, 1258, 1275
BbvI GCAGC 3 cut(s) 189, 229, 682
BccI CCATC 6 cut(s) 199, 209, 376, 930, 1103, 1174
BceAI ACGGC 2 cut(s) 384, 1139
BciT130I CCWGG 3 cut(s) 1070, 1115, 1171
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 1 cut(s) 699
BglII AGATCT 3 cut(s) 1031, 1046, 1225
BisI GCNGC 4 cut(s) 178, 243, 299, 671
BlsI GCNGC 4 cut(s) 179, 244, 300, 672
Bme1390I CCNGG 3 cut(s) 1070, 1115, 1171
BmgT120I GGNCC 2 cut(s) 151, 259
BmiI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BmrFI CCNGG 3 cut(s) 1070, 1115, 1171
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 5 cut(s) 325, 334, 358, 911, 1129
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 3 cut(s) 470, 675, 695
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 410, 1106
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 255, 1024
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1148
Bse1I ACTGG 4 cut(s) 51, 119, 692, 710
Bse3DI GCAATG 2 cut(s) 924, 1348
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 3 cut(s) 1070, 1115, 1171
BseDI CCNNGG 2 cut(s) 255, 1024
BseGI GGATG 4 cut(s) 321, 926, 1114, 1166
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 2 cut(s) 147, 1148
BseMI GCAATG 2 cut(s) 924, 1348
BseMII CTCAG 2 cut(s) 1085, 1307
BseNI ACTGG 4 cut(s) 51, 119, 692, 710
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 3 cut(s) 189, 229, 682
BseYI CCCAGC 1 cut(s) 1141
Bsh1236I CGCG 3 cut(s) 296, 298, 539
BshFI GGCC 4 cut(s) 140, 153, 261, 1113
BshNI GGYRCC 3 cut(s) 87, 794, 1305
BsiHKAI GWGCWC 4 cut(s) 721, 909, 1258, 1275
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 147, 1148
BsmAI GTCTC 1 cut(s) 793
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 4 cut(s) 140, 153, 261, 1113
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
Bsp143I GATC 4 cut(s) 385, 1031, 1046, 1225
BspACI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
BspANI GGCC 4 cut(s) 140, 153, 261, 1113
BspCNI CTCAG 2 cut(s) 1086, 1306
BspFNI CGCG 3 cut(s) 296, 298, 539
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 3 cut(s) 87, 794, 1305
BsrDI GCAATG 2 cut(s) 924, 1348
BsrI ACTGG 4 cut(s) 51, 119, 692, 710
BssECI CCNNGG 2 cut(s) 255, 1024
BssMI GATC 4 cut(s) 385, 1031, 1046, 1225
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 1070, 1115, 1171
Bst4CI ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
Bst6I CTCTTC 2 cut(s) 161, 551
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 357, 799, 931
BstDEI CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
BstDSI CCRYGG 1 cut(s) 1024
BstEII GGTNACC 1 cut(s) 1173
BstF5I GGATG 4 cut(s) 321, 926, 1114, 1166
BstFNI CGCG 3 cut(s) 296, 298, 539
BstHHI GCGC 2 cut(s) 298, 349
BstKTI GATC 4 cut(s) 388, 1034, 1049, 1228
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 4 cut(s) 385, 1031, 1046, 1225
BstMWI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
BstNI CCWGG 3 cut(s) 1070, 1115, 1171
BstPI GGTNACC 1 cut(s) 1173
BstSCI CCNGG 3 cut(s) 1068, 1113, 1169
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 3 cut(s) 296, 298, 539
BstV1I GCAGC 3 cut(s) 189, 229, 682
BstX2I RGATCY 4 cut(s) 385, 1031, 1046, 1225
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 4 cut(s) 385, 1031, 1046, 1225
BsuRI GGCC 4 cut(s) 140, 153, 261, 1113
BtgI CCRYGG 1 cut(s) 1024
BtsCI GGATG 4 cut(s) 321, 926, 1114, 1166
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 6 cut(s) 112, 699, 865, 883, 984, 1275
Cac8I GCNNGC 3 cut(s) 357, 799, 931
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 39
CfoI GCGC 2 cut(s) 298, 349
Cfr13I GGNCC 2 cut(s) 151, 259
Csp6I GTAC 2 cut(s) 88, 833
CviAII CATG 7 cut(s) 40, 413, 680, 726, 802, 910, 1322
CviQI GTAC 2 cut(s) 88, 833
DdeI CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
DpnI GATC 4 cut(s) 387, 1033, 1048, 1227
DpnII GATC 4 cut(s) 385, 1031, 1046, 1225
DraIII CACNNNGTG 1 cut(s) 1009
EaeI YGGCCR 1 cut(s) 1111
Eam1104I CTCTTC 2 cut(s) 161, 551
EarI CTCTTC 2 cut(s) 161, 551
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 552, 909
Eco32I GATATC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 841
Eco91I GGTNACC 1 cut(s) 1173
EcoICRI GAGCTC 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 151, 259
EcoO65I GGTNACC 1 cut(s) 1173
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 1068, 1113, 1169
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 552, 909
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 39, 412, 679, 725, 801, 909, 1321
FauI CCCGC 1 cut(s) 989
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 4 cut(s) 178, 243, 299, 671
FokI GGATG 4 cut(s) 308, 933, 1121, 1153
FriOI GRGCYC 2 cut(s) 552, 909
Fsp4HI GCNGC 4 cut(s) 178, 243, 299, 671
FspAI RTGCGCAY 1 cut(s) 348
FspBI CTAG 1 cut(s) 917
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 2 cut(s) 297, 348
GluI GCNGC 4 cut(s) 178, 243, 299, 671
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 3 cut(s) 470, 675, 695
HaeIII GGCC 4 cut(s) 140, 153, 261, 1113
HapII CCGG 1 cut(s) 792
HhaI GCGC 2 cut(s) 298, 349
Hin1II CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
Hin6I GCGC 2 cut(s) 296, 347
HinP1I GCGC 2 cut(s) 296, 347
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 8 cut(s) 73, 119, 197, 488, 593, 823, 977, 1210
HpaII CCGG 1 cut(s) 792
HphI GGTGA 1 cut(s) 1167
Hpy166II GTNNAC 5 cut(s) 196, 276, 332, 703, 1286
Hpy188I TCNGA 9 cut(s) 72, 184, 229, 403, 626, 723, 1095, 1209, 1296
Hpy188III TCNNGA 8 cut(s) 40, 133, 389, 553, 615, 764, 1004, 1085
Hpy8I GTNNAC 5 cut(s) 196, 276, 332, 703, 1286
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 130, 151, 1261
HpyCH4III ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 6 cut(s) 266, 924, 929, 1014, 1120, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
HpyF3I CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
HspAI GCGC 2 cut(s) 296, 347
KpnI GGTACC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 385, 1031, 1046, 1225
LmnI GCTCC 6 cut(s) 9, 394, 676, 994, 1151, 1270
Lsp1109I GCAGC 3 cut(s) 189, 229, 682
LweI GCATC 5 cut(s) 325, 334, 358, 911, 1129
MaeI CTAG 1 cut(s) 917
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 4 cut(s) 694, 912, 1173, 1247
MalI GATC 4 cut(s) 387, 1033, 1048, 1227
MboI GATC 4 cut(s) 385, 1031, 1046, 1225
MboII GAAGA 6 cut(s) 44, 148, 151, 568, 1041, 1144
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 4 cut(s) 385, 1031, 1046, 1225
MhlI GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 4 cut(s) 113, 191, 497, 602
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 6 cut(s) 106, 164, 385, 552, 761, 866
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 2 cut(s) 51, 423
MslI CAYNNNNRTG 1 cut(s) 1326
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 673, 735
MspI CCGG 1 cut(s) 792
MspR9I CCNGG 3 cut(s) 1070, 1115, 1171
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 3 cut(s) 1070, 1115, 1171
MvnI CGCG 3 cut(s) 296, 298, 539
MwoI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
NdeI CATATG 1 cut(s) 270
NdeII GATC 4 cut(s) 385, 1031, 1046, 1225
NlaIII CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
NlaIV GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
NmuCI GTSAC 3 cut(s) 694, 1173, 1247
NsbI TGCGCA 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 926
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 4 cut(s) 73, 823, 977, 1210
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 179, 244, 300, 672
PleI GAGTC 4 cut(s) 113, 191, 496, 601
PpsI GAGTC 4 cut(s) 113, 191, 496, 601
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 3 cut(s) 1068, 1113, 1169
PspEI GGTNACC 1 cut(s) 1173
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 3 cut(s) 1068, 1113, 1169
PspN4I GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
PspPI GGNCC 2 cut(s) 151, 259
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 4 cut(s) 385, 1031, 1046, 1225
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 2 cut(s) 89, 834
RsaNI GTAC 2 cut(s) 88, 833
RseI CAYNNNNRTG 1 cut(s) 1326
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 51, 423
SatI GCNGC 4 cut(s) 178, 243, 299, 671
Sau3AI GATC 4 cut(s) 385, 1031, 1046, 1225
Sau96I GGNCC 2 cut(s) 151, 259
SchI GAGTC 4 cut(s) 113, 191, 497, 602
ScrFI CCNGG 3 cut(s) 1070, 1115, 1171
SduI GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
SfaNI GCATC 5 cut(s) 325, 334, 358, 911, 1129
SfcI CTRYAG 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 1326
SmlI CTYRAG 2 cut(s) 389, 1085
SmoI CTYRAG 2 cut(s) 389, 1085
Sse9I AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 1 cut(s) 909
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 1068, 1113, 1169
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
TaiI ACGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 63, 162, 616
TasI AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 4 cut(s) 73, 823, 977, 1210
Tru1I TTAA 2 cut(s) 51, 423
Tru9I TTAA 2 cut(s) 51, 423
TscAI CASTG 6 cut(s) 119, 699, 865, 883, 991, 1282
TseFI GTSAC 3 cut(s) 694, 1173, 1247
TseI GCWGC 3 cut(s) 177, 242, 670
Tsp45I GTSAC 3 cut(s) 694, 1173, 1247
TspDTI ATGAA 5 cut(s) 15, 28, 56, 696, 1310
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 6 cut(s) 119, 699, 865, 883, 991, 1282
Van91I CCANNNNNTGG 1 cut(s) 1148
XapI RAATTY 3 cut(s) 35, 1203, 1299
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.