Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002522.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

115145 .. 115788

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgccagtctttggagacggcaaaagttgcacccctggtggcatcctcaccgttcaaggcgataaagagctagcgagacaatgcaactccttgactgtcgcaaggggacatggcagacaagagatactcctagcttcagacctgctctccccctccgacaagccctaccatccacgggaagatcccgagacctcagacaccagcgatacacacagtaaaaagaaagatgacaagcgcaaactcaagcacctgaggccagacgccttggaagacctgatattggtctccatatcagatacacacccagaaagaaaagtcaagatcaggtccaaaacagatctacagttccaggcggagttaatcgccttccttaagaccctacaggaggtgtttgcatggtcgtatgctgacatgcccggaatatcgcctgaactgttgacccacaaactcaccatttcactagatgttcccccaatcggacagaaaagaagggccttcacggaagaaaaatacaaagccatccaggccgaagtcaagaaactccaagacatcggtttgtcagggaaatctcctacccggcatggctctccaatgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

199

Amino Acids

22.19

Weight (kDa)

8.77

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	11
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	5 cut(s)	11, 175, 280, 385, 476
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	3 cut(s)	34, 348, 522
AluBI	AGCT	2 cut(s)	70, 134
AluI	AGCT	2 cut(s)	70, 134
Alw26I	GTCTC	4 cut(s)	9, 70, 182, 289
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	254, 492, 525
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	327, 492
AsuC2I	CCSGG	2 cut(s)	417, 577
AsuHPI	GGTGA	2 cut(s)	40, 442
AsuNHI	GCTAGC	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	327
AxyI	CCTNAGG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	177, 527
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	36, 350, 524
BcnI	CCSGG	2 cut(s)	417, 577
BcoDI	GTCTC	4 cut(s)	9, 70, 182, 289
BfaI	CTAG	3 cut(s)	71, 131, 461
BfmI	CTRYAG	2 cut(s)	341, 380
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	5 cut(s)	36, 350, 417, 524, 577
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	327, 492
BmrFI	CCNGG	5 cut(s)	36, 350, 417, 524, 577
BmsI	GCATC	1 cut(s)	51
BmtI	GCTAGC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	417, 577
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	2 cut(s)	182, 289
BsaJI	CCNNGG	3 cut(s)	34, 173, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 175, 280, 385, 476
Bse1I	ACTGG	1 cut(s)	5
Bse21I	CCTNAGG	1 cut(s)	251
BseBI	CCWGG	3 cut(s)	36, 350, 524
BseDI	CCNNGG	3 cut(s)	34, 173, 264
BseGI	GGATG	3 cut(s)	42, 169, 519
BseLI	CCNNNNNNNGG	5 cut(s)	11, 175, 280, 385, 476
BseMII	CTCAG	2 cut(s)	207, 242
BseNI	ACTGG	1 cut(s)	5
BshFI	GGCC	3 cut(s)	256, 494, 527
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	417, 577
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	11, 175, 280, 385, 476
BsmAI	GTCTC	4 cut(s)	9, 70, 182, 289
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	256, 494, 527
Bso31I	GGTCTC	2 cut(s)	182, 289
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	181, 321, 337
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	3 cut(s)	256, 494, 527
BspCNI	CTCAG	2 cut(s)	206, 243
BspMI	ACCTGC	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	176
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	2 cut(s)	182, 289
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	34, 173, 264
BssMI	GATC	3 cut(s)	181, 321, 337
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	3 cut(s)	36, 350, 524
Bst4CI	ACNGT	5 cut(s)	52, 97, 215, 345, 435
BstACI	GRCGYC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	193, 251
BstDSI	CCRYGG	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	3 cut(s)	42, 169, 519
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	184, 324, 340
BstMAI	GTCTC	4 cut(s)	9, 70, 182, 289
BstMBI	GATC	3 cut(s)	181, 321, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 253, 524
BstNI	CCWGG	3 cut(s)	36, 350, 524
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	5 cut(s)	34, 348, 415, 522, 575
BstSFI	CTRYAG	2 cut(s)	341, 380
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	181, 337
BstYI	RGATCY	2 cut(s)	181, 337
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	256, 494, 527
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	42, 169, 519
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	327, 492
CseI	GACGC	1 cut(s)	269
CviAII	CATG	4 cut(s)	110, 396, 412, 581
CviJI	RGCY	8 cut(s)	70, 134, 163, 256, 494, 518, 527, 585
CviKI_1	RGCY	8 cut(s)	70, 134, 163, 256, 494, 518, 527, 585
DdeI	CTNAG	2 cut(s)	193, 251
DpnI	GATC	3 cut(s)	183, 323, 339
DpnII	GATC	3 cut(s)	181, 321, 337
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	2 cut(s)	182, 289
Eco47I	GGWCC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	3 cut(s)	34, 348, 522
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	4 cut(s)	113, 399, 415, 584
FaiI	YATR	6 cut(s)	111, 290, 397, 405, 413, 582
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	109, 395, 411, 580
FokI	GGATG	3 cut(s)	29, 156, 506
FspBI	CTAG	3 cut(s)	71, 131, 461
GlaI	GCGC	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	256, 494, 527
HapII	CCGG	2 cut(s)	417, 577
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	113, 399, 415, 584
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HpaII	CCGG	2 cut(s)	417, 577
HphI	GGTGA	2 cut(s)	40, 442
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	5 cut(s)	139, 157, 196, 295, 479
Hpy188III	TCNNGA	3 cut(s)	185, 319, 535
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	3 cut(s)	376, 483, 505
HpyCH4III	ACNGT	5 cut(s)	52, 97, 215, 345, 435
HpyCH4V	TGCA	3 cut(s)	30, 84, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 253, 524
HpyF3I	CTNAG	2 cut(s)	193, 251
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	113, 399, 415, 584
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	181, 321, 337
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	3 cut(s)	71, 131, 461
MalI	GATC	3 cut(s)	183, 323, 339
MboI	GATC	3 cut(s)	181, 321, 337
MboII	GAAGA	3 cut(s)	191, 281, 515
MflI	RGATCY	2 cut(s)	181, 337
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	56, 163, 202, 246, 379
MseI	TTAA	2 cut(s)	359, 372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	417, 577
MspR9I	CCNGG	5 cut(s)	36, 350, 417, 524, 577
MvaI	CCWGG	3 cut(s)	36, 350, 524
MwoI	GCNNNNNNNGC	3 cut(s)	27, 253, 524
NciI	CCSGG	2 cut(s)	417, 577
NdeII	GATC	3 cut(s)	181, 321, 337
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	113, 399, 415, 584
NspI	RCATGY	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	34, 348, 522
PspGI	CCWGG	3 cut(s)	34, 348, 522
PspPI	GGNCC	2 cut(s)	327, 492
PsuI	RGATCY	2 cut(s)	181, 337
SaqAI	TTAA	2 cut(s)	359, 372
Sau3AI	GATC	3 cut(s)	181, 321, 337
Sau96I	GGNCC	2 cut(s)	327, 492
ScrFI	CCNGG	5 cut(s)	36, 350, 417, 524, 577
SetI	ASST	8 cut(s)	72, 136, 144, 194, 252, 276, 329, 390
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	2 cut(s)	341, 380
SinI	GGWCC	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	242, 371
SmoI	CTYRAG	2 cut(s)	242, 371
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	3 cut(s)	71, 131, 461
StyD4I	CCNGG	5 cut(s)	34, 348, 415, 522, 575
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	5 cut(s)	52, 97, 215, 345, 435
Tru1I	TTAA	2 cut(s)	359, 372
Tru9I	TTAA	2 cut(s)	359, 372
TspGWI	ACGGA	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	11
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	327
XagI	CCTNNNNNAGG	1 cut(s)	383
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	3 cut(s)	71, 131, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.