Rmu_sc0002525.1_g000001

Isochorismatase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002525.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 603
602 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
atgggagacagatggaagcacacagctctccttgtcgttgacatgcagaaagattttatagatggggatggtcctatgctagtgaaaggaggcaaagccatagtcccaaatgtaatagaggcagttcaaatggctaggcagcgtggcattctcgtagtttgggttgtgcgtgaacatgatccattaggaagagatgttgagctatttcgccggcatttgtat

Protein Analysis

74

Amino Acids

8.49

Weight (kDa)

8.2

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isochorismatase PF00857 8 - 60 8e-10 Isochorismatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 2 cut(s) 26, 202
AluI AGCT 2 cut(s) 26, 202
AlwI GGATC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 151
BccI CCATC 3 cut(s) 6, 56, 62
BfaI CTAG 2 cut(s) 80, 135
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 210
BseGI GGATG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 178
BspPI GGATC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssMI GATC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 71
CviAII CATG 2 cut(s) 43, 176
CviJI RGCY 4 cut(s) 26, 98, 134, 202
CviKI_1 RGCY 4 cut(s) 26, 98, 134, 202
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 71
FaeI CATG 2 cut(s) 46, 179
FaiI YATR 5 cut(s) 44, 59, 77, 101, 177
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 42, 175
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 80, 135
GluI GCNGC 1 cut(s) 140
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 46, 179
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HpaII CCGG 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 40, 173
Hpy8I GTNNAC 2 cut(s) 40, 173
HpyCH4V TGCA 1 cut(s) 46
Hsp92II CATG 2 cut(s) 46, 179
KroI GCCGGC 1 cut(s) 210
KroNI GCCGGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 2 cut(s) 80, 135
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 201
MnlI CCTC 2 cut(s) 83, 112
MroNI GCCGGC 1 cut(s) 210
MspI CCGG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 212
NdeII GATC 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 210
NlaIII CATG 2 cut(s) 46, 179
NspI RCATGY 1 cut(s) 46
PctI GAATGC 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 71
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 71
SetI ASST 2 cut(s) 28, 204
SgeI CNNG 8 cut(s) 44, 55, 92, 147, 155, 164, 182, 188
SinI GGWCC 1 cut(s) 71
SspMI CTAG 2 cut(s) 80, 135
TseI GCWGC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 1 cut(s) 46
XspI CTAG 2 cut(s) 80, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.