Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002529.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24004 .. 25751

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgtcgagtcatcgaaaccagggcaacaccaataggcaagccgaaggaagcatgggttttgccaaaacccaaaaggtcttcgtccccaaaaatcaaggccagaatcgtcccagaagccctaaatctccaaatcccacgctctttgcctccttccggcaatggctgtcccagccgtccaatgcaaaagcttcaagcgccgctgcttgtgcgccgctggagagtaatagtagtagtactggcctcggcgccgacgaaggtggattggacgctgtggagtctgagagagtcgtcaatcttctcaatagagagctttctcgattgctcaagctaaaccctaaggaattttggaaacaagtggctagtgatacttccttgcgtgaatttctggagagcttcctacagtttcgtaataggtggtgtgatttccctcatcccggagccaaggacatggtggcaggggtcattgtaggggaattagaactaagccgctgtgtttttatggtattgtatcgaatatcttctaacaaggatcctggtgctcgggctgttgaaagtctcagtccaaaagaccatgaaggcatgcacgagtcaaagtttatccaaaatattgttaaagtggtccaagacaggataggtcgtatgcccctaagcgatgtccagaaggaattagaggagaagctgttatctgttaacttcgttcttgatgatgccgaggggaagcaactgaaattcccaacaactgtgaagccatggcttcataagcttaaagaggttgtctatgatgctgtggacctgttgcaggagatcaaaacaaaagagttgaggcaaaagatagaacacgaatgtgggagtagcacgagtaaagtggaagaactcatctctgttaagatatgtttggagtggttaagagttcttgttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

307

Amino Acids

34.46

Weight (kDa)

8.71

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	217 - 284	1.2e-11	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	3 cut(s)	198, 212, 487
AclWI	GGATC	2 cut(s)	524, 537
AcsI	RAATTY	3 cut(s)	341, 380, 728
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	153, 434, 799
AgsI	TTSAA	2 cut(s)	192, 551
AjnI	CCWGG	2 cut(s)	18, 532
AleI	CACNNNNGTG	1 cut(s)	843
AluBI	AGCT	6 cut(s)	188, 310, 328, 393, 679, 763
AluI	AGCT	6 cut(s)	188, 310, 328, 393, 679, 763
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	524, 537
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	2 cut(s)	97, 238
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	341, 380, 728
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	3 cut(s)	197, 211, 248
AspS9I	GGNCC	2 cut(s)	619, 790
AsuC2I	CCSGG	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	2 cut(s)	619, 790
AxyI	CCTNAGG	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	245
BauI	CACGAG	2 cut(s)	584, 856
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	20, 534
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	398
BfoI	RGCGCY	2 cut(s)	198, 249
BisI	GCNGC	4 cut(s)	198, 201, 212, 487
BlsI	GCNGC	4 cut(s)	199, 202, 213, 488
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	3 cut(s)	20, 435, 534
Bme18I	GGWCC	2 cut(s)	619, 790
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	619, 790
BmiI	GGNNCC	3 cut(s)	247, 439, 531
BmrFI	CCNGG	3 cut(s)	20, 435, 534
BmsI	GCATC	2 cut(s)	697, 772
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	2 cut(s)	236, 407
Bpu10I	CCTNAGC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	19, 241, 441, 711, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 434, 799
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	20, 534
BseDI	CCNNGG	5 cut(s)	19, 241, 441, 711, 749
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	153, 434, 799
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	270, 571
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	99, 240
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	154, 435
BslFI	GGGAC	3 cut(s)	68, 93, 151
BslI	CCNNNNNNNGG	3 cut(s)	153, 434, 799
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	3 cut(s)	68, 93, 151
BsnI	GGCC	2 cut(s)	99, 240
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	529, 804
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	3 cut(s)	198, 212, 487
BspANI	GGCC	2 cut(s)	99, 240
BspCNI	CTCAG	2 cut(s)	271, 570
BspLI	GGNNCC	3 cut(s)	247, 439, 531
BspPI	GGATC	2 cut(s)	524, 537
BspT107I	GGYRCC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	5 cut(s)	19, 241, 441, 711, 749
BssMI	GATC	2 cut(s)	529, 804
BssNI	GRCGYC	1 cut(s)	246
BssSI	CACGAG	2 cut(s)	584, 856
BssT1I	CCWWGG	2 cut(s)	441, 749
Bst2BI	CACGAG	2 cut(s)	584, 856
Bst2UI	CCWGG	2 cut(s)	20, 534
Bst4CI	ACNGT	2 cut(s)	402, 742
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	39, 581
BstDEI	CTNAG	5 cut(s)	279, 336, 482, 557, 647
BstDSI	CCRYGG	1 cut(s)	749
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	2 cut(s)	198, 249
BstHHI	GCGC	3 cut(s)	197, 211, 248
BstKTI	GATC	2 cut(s)	532, 807
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	529, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 194, 206, 760
BstNI	CCWGG	2 cut(s)	20, 534
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	18, 433, 532
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	529
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	99, 240
BtgI	CCRYGG	1 cut(s)	749
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	39, 581
CfoI	GCGC	3 cut(s)	197, 211, 248
Cfr13I	GGNCC	2 cut(s)	619, 790
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	5 cut(s)	52, 448, 572, 580, 750
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	5 cut(s)	279, 336, 482, 557, 647
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	2 cut(s)	531, 806
DpnII	GATC	2 cut(s)	529, 804
Eco130I	CCWWGG	2 cut(s)	441, 749
Eco47I	GGWCC	2 cut(s)	619, 790
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	18, 532
EcoT14I	CCWWGG	2 cut(s)	441, 749
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	441, 749
FaeI	CATG	5 cut(s)	55, 451, 575, 583, 753
FaqI	GGGAC	3 cut(s)	68, 93, 151
FatI	CATG	5 cut(s)	51, 447, 571, 579, 749
Fnu4HI	GCNGC	4 cut(s)	198, 201, 212, 487
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	198, 201, 212, 487
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	3 cut(s)	196, 210, 247
GluI	GCNGC	4 cut(s)	198, 201, 212, 487
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	2 cut(s)	236, 407
HaeII	RGCGCY	2 cut(s)	198, 249
HaeIII	GGCC	2 cut(s)	99, 240
HapII	CCGG	2 cut(s)	154, 435
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	3 cut(s)	197, 211, 248
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	55, 451, 575, 583, 753
Hin6I	GCGC	3 cut(s)	195, 209, 246
HinP1I	GCGC	3 cut(s)	195, 209, 246
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	2 cut(s)	186, 761
HinfI	GANTC	5 cut(s)	7, 103, 275, 285, 587
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	2 cut(s)	154, 435
Hpy166II	GTNNAC	2 cut(s)	691, 790
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	315, 386, 658, 701
Hpy8I	GTNNAC	2 cut(s)	691, 790
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	5 cut(s)	38, 160, 248, 569, 655
HpyCH4III	ACNGT	2 cut(s)	402, 742
HpyCH4V	TGCA	3 cut(s)	182, 583, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 194, 206, 760
HpyF3I	CTNAG	5 cut(s)	279, 336, 482, 557, 647
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	55, 451, 575, 583, 753
HspAI	GCGC	3 cut(s)	195, 209, 246
KasI	GGCGCC	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	529, 804
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	697, 772
MaeI	CTAG	1 cut(s)	360
MalI	GATC	2 cut(s)	531, 806
MboI	GATC	2 cut(s)	529, 804
MboII	GAAGA	4 cut(s)	70, 287, 510, 881
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	5 cut(s)	341, 380, 473, 665, 728
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	4 cut(s)	16, 284, 294, 596
MnlI	CCTC	7 cut(s)	157, 251, 438, 664, 706, 763, 816
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	6 cut(s)	612, 690, 765, 885, 905, 922
MslI	CAYNNNNRTG	1 cut(s)	843
MspA1I	CMGCKG	3 cut(s)	200, 214, 489
MspI	CCGG	2 cut(s)	154, 435
MspR9I	CCNGG	3 cut(s)	20, 435, 534
MvaI	CCWGG	2 cut(s)	20, 534
MwoI	GCNNNNNNNGC	4 cut(s)	169, 194, 206, 760
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	2 cut(s)	529, 804
NlaIII	CATG	5 cut(s)	55, 451, 575, 583, 753
NlaIV	GGNNCC	3 cut(s)	247, 439, 531
NmeAIII	GCCGAG	2 cut(s)	222, 736
NspI	RCATGY	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	843
PaeI	GCATGC	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	4 cut(s)	199, 202, 213, 488
PleI	GAGTC	4 cut(s)	15, 283, 293, 595
PluTI	GGCGCC	1 cut(s)	249
PpsI	GAGTC	4 cut(s)	15, 283, 293, 595
Psp6I	CCWGG	2 cut(s)	18, 532
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	2 cut(s)	18, 532
PspN4I	GGNNCC	3 cut(s)	247, 439, 531
PspPI	GGNCC	2 cut(s)	619, 790
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	6 cut(s)	612, 690, 765, 885, 905, 922
SatI	GCNGC	4 cut(s)	198, 201, 212, 487
Sau3AI	GATC	2 cut(s)	529, 804
Sau96I	GGNCC	2 cut(s)	619, 790
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	4 cut(s)	16, 284, 294, 596
ScrFI	CCNGG	3 cut(s)	20, 435, 534
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	697, 772
SfcI	CTRYAG	1 cut(s)	398
SfoI	GGCGCC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	619, 790
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	5 cut(s)	341, 380, 473, 665, 728
SsiI	CCGC	3 cut(s)	198, 212, 487
SspDI	GGCGCC	1 cut(s)	245
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	18, 433, 532
StyI	CCWWGG	2 cut(s)	441, 749
TaaI	ACNGT	2 cut(s)	402, 742
TaqI	TCGA	4 cut(s)	5, 13, 316, 511
TasI	AATT	5 cut(s)	341, 380, 473, 665, 728
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	3 cut(s)	200, 214, 489
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	6 cut(s)	612, 690, 765, 885, 905, 922
Tru9I	TTAA	6 cut(s)	612, 690, 765, 885, 905, 922
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	588, 746
VpaK11BI	GGWCC	2 cut(s)	619, 790
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	3 cut(s)	341, 380, 728
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.