Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002531.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

346261 .. 346632

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgcaacaacaccaaatatctttgaggaccctagggaagaaatatgtcaaaaaggagcctgtcaacccagaaacatccttgagggttatcagcatctccgacgagcaccctgagaggacagtccatatcggcatatcccccgagatcataacgcacaatgtgagtatcaaaccttccgctgaccccatcaagcagcgacgaagggcctttgatgaggagagataccgtgcaataggagaagaggttgccaagctccagagcattggattcatccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

92

Amino Acids

10.6

Weight (kDa)

9.69

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 274
AdeI	CACNNNGTG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	27, 204
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	27
AvrII	CCTAGG	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	194
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	27, 204
BmiI	GGNNCC	2 cut(s)	29, 57
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	74, 270
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	140
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	2 cut(s)	177, 274
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	29, 57
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	121, 227
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	74, 270
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	74, 270
Cfr13I	GGNCC	2 cut(s)	27, 204
CviJI	RGCY	3 cut(s)	58, 206, 253
CviKI_1	RGCY	3 cut(s)	58, 206, 253
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	27, 204
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	4 cut(s)	45, 126, 134, 149
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	61, 257
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	104, 201
HpyAV	CCTTC	2 cut(s)	183, 195
HpyCH4III	ACNGT	2 cut(s)	121, 227
HpyCH4V	TGCA	2 cut(s)	4, 230
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	55, 258
LpnPI	CCDG	4 cut(s)	72, 81, 123, 269
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	32
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	49, 251
MhlI	GDGCHC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	18, 75, 108, 208, 235
MspA1I	CMGCKG	1 cut(s)	179
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	29, 57
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	29, 57
PspPI	GGNCC	2 cut(s)	27, 204
PspPPI	RGGWCCY	1 cut(s)	27
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	27, 204
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	3 cut(s)	175, 246, 255
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SsiI	CCGC	2 cut(s)	177, 274
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	121, 227
TfiI	GAWTC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	27
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.