Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

157649 .. 163229

Gene Structure 5581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgcaggagtggttaacttcactgaccatctccacagaccttctccatcgttcatcatcatcttctagttcgattggaacgaggcggagccgaagcgcatcggatgtgcaggatcgagggtgcaggttcgagttttgcctggcgacgtcgaatctatggcggcctggatcgcatcggatcggactgatccgatctggactgggttcacagatccaagctagggatagatttgcttggaggaggcggcacttttatttggtgcgacggggatggcggaatgacggcgttgccagattcgggggatggaggagagaaatcgactgcccttcatggatgagtattccgataaaagagctagtgatggacttctctagaaaggggcctggttttgttttgaggggaactccaaacagagatcgtaatgctcaggtttgcagccgactaggatgcagtggaacactgaattctgtgaaaggtgttgaaattgaaaaggccaaatcttcaaagcctgcattctggtcttcttcaagtgggaaagagatagttggaagttcctctaggcatggtccaggaagggtggatgtgcagtggatggcaggttgggcagatctgttccgatctgaccttctctggtcgtggccgagcacgggtgcagagtggggtgggggtcttgctggccagcattgcgttatgaggtcaccgaagcagattggatcagagcagtggatggggcgccgatctcctggcaatggcgatccagaaggaatctgtaacaccttgagtcgaccttcgatatcagcgacgacctatggtcagcaacggggtgctgcagggtcgatggcgctagtttggtggtgggattgcatggttgctgctctttggtggcggagttggtggaggagggacatgatttctacagatccggcgttccatggggagattgaaggttgggctcggcttagggcgagttgggccctttctggtgggctgttgactttggttttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

335

Amino Acids

37.54

Weight (kDa)

10.7

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1006
AatII	GACGTC	1 cut(s)	149
Acc36I	ACCTGC	2 cut(s)	114, 587
AccB1I	GGYRCC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	784
AciI	CCGC	5 cut(s)	85, 160, 244, 274, 886
AclWI	GGATC	8 cut(s)	120, 175, 181, 185, 205, 721, 749, 914
AcoI	YGGCCR	2 cut(s)	638, 676
AcsI	RAATTY	1 cut(s)	463
AcyI	GRCGYC	2 cut(s)	146, 733
AfiI	CCNNNNNNNGG	4 cut(s)	220, 297, 647, 749
AgsI	TTSAA	5 cut(s)	482, 488, 504, 528, 944
AhdI	GACNNNNNGTC	1 cut(s)	810
AjnI	CCWGG	5 cut(s)	138, 163, 382, 568, 742
AluBI	AGCT	2 cut(s)	218, 355
AluI	AGCT	2 cut(s)	218, 355
Alw21I	GWGCWC	1 cut(s)	647
AlwI	GGATC	8 cut(s)	120, 175, 181, 185, 205, 721, 749, 914
AoxI	GGCC	6 cut(s)	161, 380, 492, 638, 676, 972
ApaI	GGGCCC	1 cut(s)	976
ApeKI	GCWGC	3 cut(s)	435, 827, 872
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	98, 735, 844
AspS9I	GGNCC	4 cut(s)	380, 566, 972, 973
AsuHPI	GGTGA	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	976
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	955, 976
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	447, 814, 859
BccI	CCATC	8 cut(s)	35, 54, 264, 297, 355, 586, 721, 832
BceAI	ACGGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	5 cut(s)	140, 165, 384, 570, 744
BfaI	CTAG	7 cut(s)	66, 219, 356, 372, 443, 558, 845
BfmI	CTRYAG	2 cut(s)	828, 915
BfoI	RGCGCY	2 cut(s)	736, 845
BfuAI	ACCTGC	2 cut(s)	114, 587
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	5 cut(s)	161, 245, 436, 828, 873
BlsI	GCNGC	5 cut(s)	162, 246, 437, 829, 874
Bme1390I	CCNGG	5 cut(s)	140, 165, 384, 570, 744
Bme18I	GGWCC	1 cut(s)	566
BmeRI	GACNNNNNGTC	1 cut(s)	810
BmgT120I	GGNCC	4 cut(s)	380, 566, 972, 973
BmiI	GGNNCC	4 cut(s)	89, 381, 734, 974
BmrFI	CCNGG	5 cut(s)	140, 165, 384, 570, 744
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	107, 181, 437
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu10I	CCTNAGC	2 cut(s)	426, 959
BpuEI	CTTGAG	1 cut(s)	799
BsaHI	GRCGYC	2 cut(s)	146, 733
BsaJI	CCNNGG	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 297, 647, 749
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	682, 754
BseBI	CCWGG	5 cut(s)	140, 165, 384, 570, 744
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	8 cut(s)	109, 275, 308, 339, 452, 586, 597, 732
BseLI	CCNNNNNNNGG	4 cut(s)	220, 297, 647, 749
BseMI	GCAATG	2 cut(s)	682, 754
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	253, 322, 913
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	3 cut(s)	447, 814, 859
BsgI	GTGCAG	4 cut(s)	128, 142, 605, 672
BshFI	GGCC	6 cut(s)	163, 382, 494, 640, 678, 974
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	923
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	4 cut(s)	220, 297, 647, 749
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	6 cut(s)	163, 382, 494, 640, 678, 974
Bsp120I	GGGCCC	1 cut(s)	972
Bsp1286I	GDGCHC	3 cut(s)	647, 955, 976
Bsp19I	CCATGG	1 cut(s)	931
BspACI	CCGC	5 cut(s)	85, 160, 244, 274, 886
BspANI	GGCC	6 cut(s)	163, 382, 494, 640, 678, 974
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	89, 381, 734, 974
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	2 cut(s)	114, 587
BspPI	GGATC	8 cut(s)	120, 175, 181, 185, 205, 721, 749, 914
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	682, 754
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	931
BssNI	GRCGYC	2 cut(s)	146, 733
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	5 cut(s)	140, 165, 384, 570, 744
BstACI	GRCGYC	2 cut(s)	146, 733
BstC8I	GCNNGC	3 cut(s)	510, 676, 680
BstDEI	CTNAG	2 cut(s)	426, 959
BstDSI	CCRYGG	1 cut(s)	931
BstEII	GGTNACC	1 cut(s)	696
BstF5I	GGATG	8 cut(s)	109, 275, 308, 339, 452, 586, 597, 732
BstH2I	RGCGCY	2 cut(s)	736, 845
BstHHI	GCGC	3 cut(s)	98, 735, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 602, 684, 971
BstNI	CCWGG	5 cut(s)	140, 165, 384, 570, 744
BstPI	GGTNACC	1 cut(s)	696
BstSCI	CCNGG	5 cut(s)	138, 163, 382, 568, 742
BstSFI	CTRYAG	2 cut(s)	828, 915
BstSLI	GKGCMC	1 cut(s)	976
BstV1I	GCAGC	3 cut(s)	447, 814, 859
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	3 cut(s)	210, 607, 919
BstYI	RGATCY	3 cut(s)	210, 607, 919
BsuRI	GGCC	6 cut(s)	163, 382, 494, 640, 678, 974
BtgI	CCRYGG	1 cut(s)	931
BtsCI	GGATG	8 cut(s)	109, 275, 308, 339, 452, 586, 597, 732
BtsI	GCAGTG	3 cut(s)	457, 593, 728
BtsIMutI	CAGTG	5 cut(s)	20, 457, 458, 593, 728
BveI	ACCTGC	2 cut(s)	114, 587
Cac8I	GCNNGC	3 cut(s)	510, 676, 680
CfoI	GCGC	3 cut(s)	98, 735, 844
Cfr13I	GGNCC	4 cut(s)	380, 566, 972, 973
CviAII	CATG	5 cut(s)	330, 563, 865, 907, 932
DdeI	CTNAG	2 cut(s)	426, 959
DinI	GGCGCC	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	810
EaeI	YGGCCR	2 cut(s)	638, 676
Eam1105I	GACNNNNNGTC	1 cut(s)	810
EciI	GGCGGA	3 cut(s)	100, 289, 901
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	2 cut(s)	955, 976
Eco32I	GATATC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	566
Eco91I	GGTNACC	1 cut(s)	696
EcoO109I	RGGNCCY	2 cut(s)	380, 973
EcoO65I	GGTNACC	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	5 cut(s)	138, 163, 382, 568, 742
EcoRV	GATATC	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	2 cut(s)	955, 976
EgeI	GGCGCC	1 cut(s)	734
EheI	GGCGCC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	5 cut(s)	333, 566, 868, 910, 935
FaiI	YATR	9 cut(s)	157, 331, 564, 692, 810, 866, 908, 933, 1006
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	5 cut(s)	329, 562, 864, 906, 931
FblI	GTMKAC	1 cut(s)	784
Fnu4HI	GCNGC	5 cut(s)	161, 245, 436, 828, 873
FokI	GGATG	8 cut(s)	116, 282, 315, 346, 459, 593, 604, 739
FriOI	GRGCYC	2 cut(s)	955, 976
Fsp4HI	GCNGC	5 cut(s)	161, 245, 436, 828, 873
FspBI	CTAG	7 cut(s)	66, 219, 356, 372, 443, 558, 845
GlaI	GCGC	3 cut(s)	97, 734, 843
GluI	GCNGC	5 cut(s)	161, 245, 436, 828, 873
HaeII	RGCGCY	2 cut(s)	736, 845
HaeIII	GGCC	6 cut(s)	163, 382, 494, 640, 678, 974
HapII	CCGG	1 cut(s)	923
HhaI	GCGC	3 cut(s)	98, 735, 844
Hin1I	GRCGYC	2 cut(s)	146, 733
Hin1II	CATG	5 cut(s)	333, 566, 868, 910, 935
Hin6I	GCGC	3 cut(s)	96, 733, 842
HinP1I	GCGC	3 cut(s)	96, 733, 842
HincII	GTYRAC	3 cut(s)	15, 785, 993
HindII	GTYRAC	3 cut(s)	15, 785, 993
HinfI	GANTC	4 cut(s)	151, 294, 765, 781
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	923
HphI	GGTGA	1 cut(s)	690
Hpy166II	GTNNAC	4 cut(s)	15, 206, 785, 993
Hpy188I	TCNGA	8 cut(s)	103, 177, 182, 191, 345, 617, 622, 718
Hpy188III	TCNNGA	3 cut(s)	195, 372, 758
Hpy8I	GTNNAC	4 cut(s)	15, 206, 785, 993
Hpy99I	CGWCG	4 cut(s)	148, 151, 267, 805
HpyAV	CCTTC	7 cut(s)	50, 336, 567, 635, 755, 798, 938
HpyCH4IV	ACGT	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 602, 684, 971
HpyF3I	CTNAG	2 cut(s)	426, 959
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	2 cut(s)	146, 733
Hsp92II	CATG	5 cut(s)	333, 566, 868, 910, 935
HspAI	GCGC	3 cut(s)	96, 733, 842
KasI	GGCGCC	1 cut(s)	732
KspAI	GTTAAC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	3 cut(s)	447, 814, 859
LweI	GCATC	3 cut(s)	107, 181, 437
MaeI	CTAG	7 cut(s)	66, 219, 356, 372, 443, 558, 845
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	696, 770
MboII	GAAGA	4 cut(s)	54, 492, 513, 516
MflI	RGATCY	3 cut(s)	210, 607, 919
MhlI	GDGCHC	3 cut(s)	647, 955, 976
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	2 cut(s)	463, 483
MluNI	TGGCCA	1 cut(s)	678
Mly113I	GGCGCC	1 cut(s)	733
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	526
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	923
MspR9I	CCNGG	5 cut(s)	140, 165, 384, 570, 744
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	5 cut(s)	140, 165, 384, 570, 744
MwoI	GCNNNNNNNGC	4 cut(s)	169, 602, 684, 971
NarI	GGCGCC	1 cut(s)	733
NcoI	CCATGG	1 cut(s)	931
NlaIII	CATG	5 cut(s)	333, 566, 868, 910, 935
NlaIV	GGNNCC	4 cut(s)	89, 381, 734, 974
NmeAIII	GCCGAG	2 cut(s)	666, 934
NmuCI	GTSAC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 797
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	151, 294, 765
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	162, 246, 437, 829, 874
PleI	GAGTC	1 cut(s)	789
PluTI	GGCGCC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	789
PsiI	TTATAA	1 cut(s)	1006
Psp6I	CCWGG	5 cut(s)	138, 163, 382, 568, 742
PspEI	GGTNACC	1 cut(s)	696
PspGI	CCWGG	5 cut(s)	138, 163, 382, 568, 742
PspN4I	GGNNCC	4 cut(s)	89, 381, 734, 974
PspOMI	GGGCCC	1 cut(s)	972
PspPI	GGNCC	4 cut(s)	380, 566, 972, 973
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	3 cut(s)	210, 607, 919
SalI	GTCGAC	1 cut(s)	783
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	5 cut(s)	161, 245, 436, 828, 873
Sau96I	GGNCC	4 cut(s)	380, 566, 972, 973
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	5 cut(s)	140, 165, 384, 570, 744
SduI	GDGCHC	3 cut(s)	647, 955, 976
SfaNI	GCATC	3 cut(s)	107, 181, 437
SfcI	CTRYAG	2 cut(s)	828, 915
SfoI	GGCGCC	1 cut(s)	734
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
Sse9I	AATT	2 cut(s)	463, 483
SsiI	CCGC	5 cut(s)	85, 160, 244, 274, 886
SspDI	GGCGCC	1 cut(s)	732
SspMI	CTAG	7 cut(s)	66, 219, 356, 372, 443, 558, 845
StyD4I	CCNGG	5 cut(s)	138, 163, 382, 568, 742
StyI	CCWWGG	1 cut(s)	931
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	8 cut(s)	71, 115, 129, 149, 318, 784, 791, 836
TasI	AATT	2 cut(s)	463, 483
TauI	GCSGC	2 cut(s)	163, 247
TfiI	GAWTC	3 cut(s)	151, 294, 765
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	5 cut(s)	27, 457, 465, 593, 728
TseFI	GTSAC	1 cut(s)	696
TseI	GCWGC	3 cut(s)	435, 827, 872
Tsp45I	GTSAC	1 cut(s)	696
TspDTI	ATGAA	2 cut(s)	42, 318
TspRI	CASTG	5 cut(s)	27, 457, 465, 593, 728
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	463
XbaI	TCTAGA	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	784
XspI	CTAG	7 cut(s)	66, 219, 356, 372, 443, 558, 845
ZraI	GACGTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.