Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002536.1

Orthogroup ID

OG0031109

Physical Location & Seq

Genomic Coordinates Forward (+)

4006 .. 4671

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggagctacaaacccagcaacacctggaactacaacaacagcaaccaactgaggaggaaggaagcaaccaagcaactgggagtagtgccaacacgcctatcaggccaaccaataaccggtgggctcctacaccagctcaactgagaatcctccaggagctttactacgacagggggcttaaaaacccaaatccagagcagattcaagggatctgtctccatctgaagccgtatgggcagatcgagaacaaaaacgttttctattggttccagaacctcaaggctcgtgagagtcagaagttgaaggaaattcggaacgttcgggttggtggatcccttgatctcaaatttggatccacgagttctactgatggtggcagatccatagatctcaacttcggttccaccgattctactggtgatgatggatcgatcgatctaacccttgagttacaatcattcatggaacgccgaggaggagatcaccaggaggttgagactcttcctctgttccctgagcacggtgaaaacatccttggtaacccgaagacttcatccgaggaagttaacgcatttggttactattcaggtggctcaggcggttacaacagtggctcacctgtttctcttgagctcagcctcaatccattcggagccactgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

221

Amino Acids

24.41

Weight (kDa)

4.84

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	39 - 97	5.3e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031109)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000962.1_g000038 Rmu_sc0002536.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	600
AclI	AACGTT	2 cut(s)	255, 318
AclWI	GGATC	7 cut(s)	218, 327, 340, 348, 361, 375, 436
AcsI	RAATTY	2 cut(s)	309, 347
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	117, 521
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	206, 304
AjnI	CCWGG	3 cut(s)	24, 153, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	7, 137, 160, 634
AluI	AGCT	4 cut(s)	7, 137, 160, 634
Alw21I	GWGCWC	2 cut(s)	522, 636
Alw26I	GTCTC	2 cut(s)	221, 491
AlwI	GGATC	7 cut(s)	218, 327, 340, 348, 361, 375, 436
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	309, 347
AsiGI	ACCGGT	1 cut(s)	117
AsuHPI	GGTGA	4 cut(s)	431, 476, 536, 609
BamHI	GGATCC	2 cut(s)	332, 353
BanII	GRGCYC	2 cut(s)	127, 636
BauI	CACGAG	2 cut(s)	285, 358
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	522, 636
BccI	CCATC	3 cut(s)	228, 365, 419
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	26, 155, 488
BcoDI	GTCTC	2 cut(s)	221, 491
BglI	GCCNNNNNGGC	2 cut(s)	103, 235
BglII	AGATCT	1 cut(s)	388
BlpI	GCTNAGC	1 cut(s)	635
Bme1390I	CCNGG	3 cut(s)	26, 155, 488
BmiI	GGNNCC	6 cut(s)	126, 269, 334, 355, 403, 655
BmrFI	CCNGG	3 cut(s)	26, 155, 488
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	2 cut(s)	516, 595
Bpu1102I	GCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	3 cut(s)	263, 467, 650
Bsa29I	ATCGAT	2 cut(s)	431, 435
BsaJI	CCNNGG	3 cut(s)	472, 535, 558
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 521
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	82, 421
BseBI	CCWGG	3 cut(s)	26, 155, 488
BseCI	ATCGAT	2 cut(s)	431, 435
BseDI	CCNNGG	3 cut(s)	472, 535, 558
BseGI	GGATG	2 cut(s)	531, 554
BseLI	CCNNNNNNNGG	2 cut(s)	117, 521
BseMII	CTCAG	5 cut(s)	42, 134, 507, 609, 649
BseNI	ACTGG	2 cut(s)	82, 421
BseRI	GAGGAG	3 cut(s)	68, 489, 492
BseYI	CCCAGC	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	117
BshVI	ATCGAT	2 cut(s)	431, 435
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	522, 636
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	117, 521
BsmAI	GTCTC	2 cut(s)	221, 491
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	127, 522, 636
Bsp1720I	GCTNAGC	1 cut(s)	635
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	5 cut(s)	43, 135, 508, 608, 648
BspDI	ATCGAT	2 cut(s)	431, 435
BspLI	GGNNCC	6 cut(s)	126, 269, 334, 355, 403, 655
BspPI	GGATC	7 cut(s)	218, 327, 340, 348, 361, 375, 436
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	82, 421
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	472, 535, 558
BssSI	CACGAG	2 cut(s)	285, 358
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	2 cut(s)	285, 358
Bst2UI	CCWGG	3 cut(s)	26, 155, 488
Bst4CI	ACNGT	2 cut(s)	524, 611
Bst6I	CTCTTC	1 cut(s)	507
BstDEI	CTNAG	5 cut(s)	51, 143, 516, 595, 635
BstEII	GGTNACC	1 cut(s)	539
BstF5I	GGATG	2 cut(s)	531, 554
BstMAI	GTCTC	2 cut(s)	221, 491
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 235
BstNI	CCWGG	3 cut(s)	26, 155, 488
BstPI	GGTNACC	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	24, 153, 486
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	5 cut(s)	210, 332, 353, 380, 388
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	5 cut(s)	210, 332, 353, 380, 388
Bsu15I	ATCGAT	2 cut(s)	431, 435
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	2 cut(s)	431, 435
BtsCI	GGATG	2 cut(s)	531, 554
BtsIMutI	CAGTG	2 cut(s)	616, 657
Cfr10I	RCCGGY	1 cut(s)	117
ClaI	ATCGAT	2 cut(s)	431, 435
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	1 cut(s)	463
DdeI	CTNAG	5 cut(s)	51, 143, 516, 595, 635
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	127, 636
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	539
EcoRII	CCWGG	3 cut(s)	24, 153, 486
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	127, 636
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	1 cut(s)	466
FaiI	YATR	3 cut(s)	234, 386, 464
FatI	CATG	1 cut(s)	462
FokI	GGATG	2 cut(s)	518, 541
FriOI	GRGCYC	2 cut(s)	127, 636
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	5 cut(s)	147, 202, 292, 410, 499
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	4 cut(s)	431, 476, 536, 609
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	5 cut(s)	225, 297, 315, 559, 653
Hpy188III	TCNNGA	5 cut(s)	194, 244, 271, 287, 629
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	2 cut(s)	53, 298
HpyCH4III	ACNGT	2 cut(s)	524, 611
HpyCH4IV	ACGT	2 cut(s)	255, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 235
HpyF3I	CTNAG	5 cut(s)	51, 143, 516, 595, 635
HpySE526I	ACGT	2 cut(s)	255, 318
Hsp92II	CATG	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	568
LmnI	GCTCC	4 cut(s)	4, 130, 157, 653
MaeII	ACGT	2 cut(s)	255, 318
MaeIII	GTNAC	4 cut(s)	450, 539, 578, 602
MboII	GAAGA	2 cut(s)	494, 559
MflI	RGATCY	5 cut(s)	210, 332, 353, 380, 388
MhlI	GDGCHC	3 cut(s)	127, 522, 636
MluCI	AATT	2 cut(s)	309, 347
MlyI	GAGTC	2 cut(s)	301, 493
MseI	TTAA	3 cut(s)	180, 567, 664
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	26, 155, 488
MvaI	CCWGG	3 cut(s)	26, 155, 488
MwoI	GCNNNNNNNGC	2 cut(s)	103, 235
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	6 cut(s)	126, 269, 334, 355, 403, 655
NmeAIII	GCCGAG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	147, 202, 410
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
Ple19I	CGATCG	1 cut(s)	435
PleI	GAGTC	2 cut(s)	300, 493
PpsI	GAGTC	2 cut(s)	300, 493
Psp124BI	GAGCTC	1 cut(s)	636
Psp1406I	AACGTT	2 cut(s)	255, 318
Psp6I	CCWGG	3 cut(s)	24, 153, 486
PspEI	GGTNACC	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	24, 153, 486
PspN4I	GGNNCC	6 cut(s)	126, 269, 334, 355, 403, 655
PsuI	RGATCY	5 cut(s)	210, 332, 353, 380, 388
PvuI	CGATCG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	180, 567, 664
SchI	GAGTC	2 cut(s)	301, 493
ScrFI	CCNGG	3 cut(s)	26, 155, 488
SduI	GDGCHC	3 cut(s)	127, 522, 636
SmlI	CTYRAG	3 cut(s)	278, 446, 629
SmoI	CTYRAG	3 cut(s)	278, 446, 629
Sse9I	AATT	2 cut(s)	309, 347
SsiI	CCGC	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	3 cut(s)	24, 153, 486
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	524, 611
TaiI	ACGT	2 cut(s)	258, 321
TaqI	TCGA	3 cut(s)	243, 431, 435
TasI	AATT	2 cut(s)	309, 347
TfiI	GAWTC	3 cut(s)	147, 202, 410
Tru1I	TTAA	3 cut(s)	180, 567, 664
Tru9I	TTAA	3 cut(s)	180, 567, 664
TscAI	CASTG	2 cut(s)	616, 664
TspDTI	ATGAA	2 cut(s)	451, 543
TspRI	CASTG	2 cut(s)	616, 664
XapI	RAATTY	2 cut(s)	309, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.