Rmu_sc0002539.1_g000089

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002539.1
N/A
Physical Location & Seq
Forward (+)
348468 .. 348785
318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
atgtcgaatgaacctagactcaactttctaatgcttgactcaacaggctcgtattaccacagttgggtaaccgatgttaagaaccacctcacttcaaagagaatattacccataatccaggcacctaacctggatcgtgtgttcgtacgaacacctacaaagcatgctcaagcggttatcttgatgcgacgccatatggacaaggccctcagattggagtatatgtcaatcaaggatgcaagagagctatgggtagcactagaagagcgctttggcaatgtccaagattccctcatccctgacttgaaggttcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

105

Amino Acids

12.32

Weight (kDa)

9.45

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 1 cut(s) 147
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 64, 214
AgsI TTSAA 3 cut(s) 96, 307, 314
AjnI CCWGG 2 cut(s) 117, 129
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 269
AoxI GGCC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 119, 131
BfaI CTAG 2 cut(s) 15, 260
BfoI RGCGCY 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 119, 131
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 119, 131
BmsI GCATC 2 cut(s) 174, 226
BpuEI CTTGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 214
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 119, 131
BseGI GGATG 2 cut(s) 241, 294
BseLI CCNNNNNNNGG 2 cut(s) 64, 214
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 121
BsiWI CGTACG 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 64, 214
BsnI GGCC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 119, 131
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 241, 294
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNI CCWGG 2 cut(s) 119, 131
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 2 cut(s) 241, 294
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 164
CviJI RGCY 3 cut(s) 48, 206, 247
CviKI_1 RGCY 3 cut(s) 48, 206, 247
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 117, 129
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 113, 165, 195, 197, 222, 224, 250
FatI CATG 1 cut(s) 163
FauNDI CATATG 1 cut(s) 195
FokI GGATG 2 cut(s) 248, 281
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 3 cut(s) 18, 38, 287
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 30, 104, 116, 131, 143, 312
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 3 cut(s) 98, 218, 302
MseI TTAA 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 119, 131
MvaI CCWGG 2 cut(s) 119, 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 287
Pfl23II CGTACG 1 cut(s) 145
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 2 cut(s) 117, 129
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 117, 129
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 205
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SetI ASST 7 cut(s) 16, 90, 127, 132, 157, 249, 312
SfaNI GCATC 2 cut(s) 174, 226
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 260
StyD4I CCNGG 2 cut(s) 117, 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 5
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.