Rmu_sc0002546.1_g000003

Pollen-specific protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002546.1
N/A
Physical Location & Seq
Reverse (-)
3342 .. 3712
371 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
atgacatcaaaattagataggcgatatagtgccttggttgaggtacaggcatgtggatcaatggtgacagaggagcagcctcatgcaatgttgataccattagagtacttcctcatgggttatggcttatacaggccttctcaatcaaatgtcagcccaagaagcccattgagtccgtcctgcattgcaccagagcttctttcaccagaaagcatgggattgaagttgaaaccgataaagactcggattcctcatgatagaagtagttga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.92

Weight (kDa)

8.68

Isoelectric Point (pI)

73.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 1 - 45 3.7e-13 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AfaI GTAC 2 cut(s) 45, 107
AgsI TTSAA 2 cut(s) 223, 229
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 76, 195
BbvI GCAGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 33
Bse3DI GCAATG 2 cut(s) 93, 183
BseDI CCNNGG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 93, 183
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 136
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 56
BspANI GGCC 1 cut(s) 136
BspHI TCATGA 1 cut(s) 253
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 93, 183
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 33
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 136
CciI TCATGA 1 cut(s) 253
Csp6I GTAC 2 cut(s) 44, 106
CviAII CATG 5 cut(s) 51, 83, 115, 214, 254
CviJI RGCY 6 cut(s) 79, 126, 136, 156, 165, 196
CviKI_1 RGCY 6 cut(s) 79, 126, 136, 156, 165, 196
CviQI GTAC 2 cut(s) 44, 106
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 5 cut(s) 54, 86, 118, 217, 257
FaiI YATR 8 cut(s) 27, 52, 84, 116, 123, 130, 215, 255
FatI CATG 5 cut(s) 50, 82, 114, 213, 253
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 5 cut(s) 54, 86, 118, 217, 257
HinfI GANTC 3 cut(s) 172, 241, 247
HphI GGTGA 2 cut(s) 76, 195
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 86, 183, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 54, 86, 118, 217, 257
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 32, 118, 193, 204, 219
Lsp1109I GCAGC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MluCI AATT 1 cut(s) 11
MlyI GAGTC 2 cut(s) 181, 235
MnlI CCTC 5 cut(s) 34, 64, 90, 122, 261
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 56
NlaIII CATG 5 cut(s) 54, 86, 118, 217, 257
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 253
PceI AGGCCT 1 cut(s) 136
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 180, 235
PpsI GAGTC 2 cut(s) 180, 235
RsaI GTAC 2 cut(s) 45, 107
RsaNI GTAC 2 cut(s) 44, 106
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 56
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 2 cut(s) 181, 235
SetI ASST 2 cut(s) 45, 198
Sse9I AATT 1 cut(s) 11
SseBI AGGCCT 1 cut(s) 136
StuI AGGCCT 1 cut(s) 136
StyI CCWWGG 1 cut(s) 33
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 247
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 165
XceI RCATGY 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.