Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

139141 .. 140260

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgcagagcctagcaccaatacgacctcgtttcgggaggtgcctcccaacctttcgatcattctcttcttcttcttcttcagattactccaaccagccccacggtggcctccctcgcttcttctccgaacgcctcccttcttccaagggaggcctagttcgtgttcaagacgatgagttctggcccatgactaaatggtggtgtggatacatgtgtgcaagggtagagctgtttaatgggaaaggaggcttggtagaaggtgtcatacagacggtggaccggtccgggcttgatttcgtggccttggaagatccaaagttggttcttccacagagcacccagtggcatgtgtttgcagcttttggaactcccaaacagatcgtgtgggagatggaggcactaccagtgaaacttttggtcgctcttaggactccaaagaaacaatcagcacctacactagcagcgagaccaagtatgtttcataggattaatgaagaaaagactttgccaaaaccttcagtctttgggagactggggggcaagggcacagagtctaagggcctgaaatggaggcctaaacagctgaagcgtgccataattaaagcccaggaagaggtacctgagcatgtgccctcgcaggcagagccaaatccagagaccttggtggaatgtgggaagttcagtgaacagccagagcaggattttctcattgatgaaccaaagctggacctcgaaggtgaggcagaggaatgtgaaaaggagcaggaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

257

Amino Acids

28.89

Weight (kDa)

6.47

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	616
AccB1I	GGYRCC	2 cut(s)	39, 616
AclWI	GGATC	1 cut(s)	305
AcuI	CTGAAG	3 cut(s)	63, 501, 605
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	32, 104, 613
AflIII	ACRYGT	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	606
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	229, 359, 583, 724
AluI	AGCT	4 cut(s)	229, 359, 583, 724
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	460, 523, 650
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	6 cut(s)	106, 151, 182, 300, 559, 572
ApeKI	GCWGC	2 cut(s)	356, 461
AseI	ATTAAT	1 cut(s)	489
AsiGI	ACCGGT	1 cut(s)	279
Asp718I	GGTACC	1 cut(s)	616
AspS9I	GGNCC	5 cut(s)	183, 277, 282, 559, 727
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	749
AvaII	GGWCC	3 cut(s)	277, 282, 727
BaeGI	GKGCMC	2 cut(s)	548, 633
BaeI	ACNNNNGTAYC	2 cut(s)	199, 232
BanI	GGYRCC	2 cut(s)	39, 616
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	368, 473
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	460, 523, 650
BfaI	CTAG	3 cut(s)	11, 155, 458
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	357, 462
BlsI	GCNGC	2 cut(s)	358, 463
Bme1390I	CCNGG	2 cut(s)	286, 608
Bme18I	GGWCC	3 cut(s)	277, 282, 727
BmgT120I	GGNCC	5 cut(s)	183, 277, 282, 559, 727
BmiI	GGNNCC	2 cut(s)	41, 618
BmrFI	CCNGG	2 cut(s)	286, 608
BmrI	ACTGGG	2 cut(s)	334, 542
BmuI	ACTGGG	2 cut(s)	334, 542
Bpu10I	CCTNAGC	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	286
BsaI	GGTCTC	2 cut(s)	460, 650
BsaJI	CCNNGG	5 cut(s)	100, 144, 303, 606, 660
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 104, 613
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	3 cut(s)	340, 404, 537
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	5 cut(s)	100, 144, 303, 606, 660
BseLI	CCNNNNNNNGG	3 cut(s)	32, 104, 613
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	340, 404, 537
BseSI	GKGCMC	2 cut(s)	548, 633
BseXI	GCAGC	2 cut(s)	368, 473
BshFI	GGCC	6 cut(s)	108, 153, 184, 302, 561, 574
BshNI	GGYRCC	2 cut(s)	39, 616
BshTI	ACCGGT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	280, 285
BslI	CCNNNNNNNGG	3 cut(s)	32, 104, 613
BsmAI	GTCTC	3 cut(s)	460, 523, 650
BsnI	GGCC	6 cut(s)	108, 153, 184, 302, 561, 574
Bso31I	GGTCTC	2 cut(s)	460, 650
Bsp1286I	GDGCHC	3 cut(s)	338, 548, 633
Bsp143I	GATC	3 cut(s)	56, 310, 378
BspANI	GGCC	6 cut(s)	108, 153, 184, 302, 561, 574
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	41, 618
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	39, 616
BspTNI	GGTCTC	2 cut(s)	460, 650
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	340, 404, 537
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	5 cut(s)	100, 144, 303, 606, 660
BssMI	GATC	3 cut(s)	56, 310, 378
BssT1I	CCWWGG	3 cut(s)	144, 303, 660
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	104, 274
Bst6I	CTCTTC	2 cut(s)	70, 606
BstC8I	GCNNGC	2 cut(s)	591, 639
BstDEI	CTNAG	3 cut(s)	425, 555, 621
BstDSI	CCRYGG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	59, 313, 381
BstMAI	GTCTC	3 cut(s)	460, 523, 650
BstMBI	GATC	3 cut(s)	56, 310, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 580, 643
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	3 cut(s)	214, 350, 629
BstSCI	CCNGG	2 cut(s)	284, 606
BstSLI	GKGCMC	2 cut(s)	548, 633
BstV1I	GCAGC	2 cut(s)	368, 473
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	6 cut(s)	108, 153, 184, 302, 561, 574
BtgI	CCRYGG	1 cut(s)	100
BtsIMutI	CAGTG	3 cut(s)	347, 411, 688
Cac8I	GCNNGC	2 cut(s)	591, 639
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	5 cut(s)	183, 277, 282, 559, 727
CpoI	CGGWCCG	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	617
CspAI	ACCGGT	1 cut(s)	279
CspI	CGGWCCG	1 cut(s)	282
CviAII	CATG	5 cut(s)	187, 211, 347, 626, 771
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	425, 555, 621
DpnI	GATC	3 cut(s)	58, 312, 380
DpnII	GATC	3 cut(s)	56, 310, 378
DraIII	CACNNNGTG	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	70, 606
EarI	CTCTTC	2 cut(s)	70, 606
Eco130I	CCWWGG	3 cut(s)	144, 303, 660
Eco147I	AGGCCT	2 cut(s)	153, 574
Eco31I	GGTCTC	2 cut(s)	460, 650
Eco47I	GGWCC	3 cut(s)	277, 282, 727
Eco57I	CTGAAG	3 cut(s)	63, 501, 605
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	3 cut(s)	144, 303, 660
ErhI	CCWWGG	3 cut(s)	144, 303, 660
FaeI	CATG	5 cut(s)	190, 214, 350, 629, 774
FaiI	YATR	9 cut(s)	188, 212, 266, 348, 476, 483, 596, 627, 772
FatI	CATG	5 cut(s)	186, 210, 346, 625, 770
Fnu4HI	GCNGC	2 cut(s)	357, 462
Fsp4HI	GCNGC	2 cut(s)	357, 462
FspBI	CTAG	3 cut(s)	11, 155, 458
GluI	GCNGC	2 cut(s)	357, 462
HaeIII	GGCC	6 cut(s)	108, 153, 184, 302, 561, 574
HapII	CCGG	2 cut(s)	280, 285
Hin1II	CATG	5 cut(s)	190, 214, 350, 629, 774
HinfI	GANTC	2 cut(s)	430, 551
HpaII	CCGG	2 cut(s)	280, 285
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	2 cut(s)	277, 686
Hpy188I	TCNGA	2 cut(s)	82, 127
Hpy188III	TCNNGA	3 cut(s)	34, 167, 653
Hpy8I	GTNNAC	2 cut(s)	277, 686
HpyAV	CCTTC	4 cut(s)	147, 251, 525, 728
HpyCH4III	ACNGT	2 cut(s)	104, 274
HpyCH4V	TGCA	3 cut(s)	4, 218, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 580, 643
HpyF3I	CTNAG	3 cut(s)	425, 555, 621
Hsp92II	CATG	5 cut(s)	190, 214, 350, 629, 774
KpnI	GGTACC	1 cut(s)	620
Kzo9I	GATC	3 cut(s)	56, 310, 378
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	2 cut(s)	368, 473
MaeI	CTAG	3 cut(s)	11, 155, 458
MalI	GATC	3 cut(s)	58, 312, 380
MboI	GATC	3 cut(s)	56, 310, 378
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	338, 548, 633
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	424, 560
MmeI	TCCRAC	1 cut(s)	114
MseI	TTAA	3 cut(s)	234, 489, 600
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	280, 285
MspR9I	CCNGG	2 cut(s)	286, 608
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	114, 580, 643
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	56, 310, 378
NlaIII	CATG	5 cut(s)	190, 214, 350, 629, 774
NlaIV	GGNNCC	2 cut(s)	41, 618
NspI	RCATGY	3 cut(s)	214, 350, 629
PceI	AGGCCT	2 cut(s)	153, 574
PciI	ACATGT	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	358, 463
PleI	GAGTC	2 cut(s)	424, 559
PpsI	GAGTC	2 cut(s)	424, 559
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	41, 618
PspPI	GGNCC	5 cut(s)	183, 277, 282, 559, 727
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
Rsr2I	CGGWCCG	1 cut(s)	282
RsrII	CGGWCCG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	234, 489, 600
SatI	GCNGC	2 cut(s)	357, 462
Sau3AI	GATC	3 cut(s)	56, 310, 378
Sau96I	GGNCC	5 cut(s)	183, 277, 282, 559, 727
SchI	GAGTC	2 cut(s)	424, 560
ScrFI	CCNGG	2 cut(s)	286, 608
SduI	GDGCHC	3 cut(s)	338, 548, 633
SinI	GGWCC	3 cut(s)	277, 282, 727
Sse9I	AATT	1 cut(s)	597
SseBI	AGGCCT	2 cut(s)	153, 574
SspMI	CTAG	3 cut(s)	11, 155, 458
StuI	AGGCCT	2 cut(s)	153, 574
StyD4I	CCNGG	2 cut(s)	284, 606
StyI	CCWWGG	3 cut(s)	144, 303, 660
TaaI	ACNGT	2 cut(s)	104, 274
TaqI	TCGA	2 cut(s)	55, 732
TasI	AATT	1 cut(s)	597
Tru1I	TTAA	3 cut(s)	234, 489, 600
Tru9I	TTAA	3 cut(s)	234, 489, 600
TscAI	CASTG	3 cut(s)	347, 411, 688
TseI	GCWGC	2 cut(s)	356, 461
TspDTI	ATGAA	3 cut(s)	470, 507, 729
TspRI	CASTG	3 cut(s)	347, 411, 688
VpaK11BI	GGWCC	3 cut(s)	277, 282, 727
VspI	ATTAAT	1 cut(s)	489
XceI	RCATGY	3 cut(s)	214, 350, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	3 cut(s)	11, 155, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.