Rmu_sc0002575.1_g000004

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
N/A
Physical Location & Seq
Forward (+)
15278 .. 17964
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
atgtctgcggaatcagccagcgcaattcagagaagccaagttgatctgatggacttcatagattggtctggggttgaatgcctcaaccaaagcaccagtcactctgttgctaacgctcttaagcagctgcactctattgtcatcaaaggacctgaagaggaaggtcccaagacagtgaagcttttttcaaataaggagcacatgggtttcagcaatgtcaatgactacccggcaagtgacacagttgttttatcgcctgatcatctaaagggaaaaccagttgttttgaagtatgtcaaatttcaaaatgttcgcagcttgacaattttcattgaggataatcagtctgactcagagatcacaaaagttcaaaagattggcctggttggaacaacggtggaaacaactgacatgaagggtttgaagaagattgaggatggccactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

148

Amino Acids

16.3

Weight (kDa)

5.7

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PITH PF06201 42 - 144 3.1e-29 PITH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 174
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 6 cut(s) 77, 189, 289, 305, 371, 424
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 3 cut(s) 127, 181, 318
AluI AGCT 3 cut(s) 127, 181, 318
Alw21I GWGCWC 1 cut(s) 201
AoxI GGCC 2 cut(s) 379, 439
ApeKI GCWGC 3 cut(s) 124, 127, 315
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 149, 164
AsuC2I CCSGG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 149, 164
BalI TGGCCA 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 114, 136, 327
BccI CCATC 2 cut(s) 43, 431
BciT130I CCWGG 1 cut(s) 383
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 125, 128, 316
BlsI GCNGC 3 cut(s) 126, 129, 317
Bme1390I CCNGG 2 cut(s) 230, 383
Bme18I GGWCC 2 cut(s) 149, 164
BmgT120I GGNCC 2 cut(s) 149, 164
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 230, 383
BpuMI CCSGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 96, 278
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 96, 278
BseXI GCAGC 3 cut(s) 114, 136, 327
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 381, 441
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 2 cut(s) 381, 441
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 43, 259, 357
BspACI CCGC 1 cut(s) 8
BspANI GGCC 2 cut(s) 381, 441
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 2 cut(s) 96, 278
BssMI GATC 3 cut(s) 43, 259, 357
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 175, 244, 397
Bst6I CTCTTC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 46, 262, 360
BstMBI GATC 3 cut(s) 43, 259, 357
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 228, 381
BstV1I GCAGC 3 cut(s) 114, 136, 327
BsuRI GGCC 2 cut(s) 381, 441
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 180, 442
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 149, 164
CviAII CATG 2 cut(s) 202, 412
CviJI RGCY 7 cut(s) 17, 36, 127, 181, 318, 381, 441
CviKI_1 RGCY 7 cut(s) 17, 36, 127, 181, 318, 381, 441
DdeI CTNAG 1 cut(s) 352
DpnI GATC 3 cut(s) 45, 261, 359
DpnII GATC 3 cut(s) 43, 259, 357
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 149, 164
Eco57I CTGAAG 1 cut(s) 174
EcoO109I RGGNCCY 2 cut(s) 149, 164
EcoRII CCWGG 1 cut(s) 381
FaeI CATG 2 cut(s) 205, 415
FaiI YATR 4 cut(s) 59, 203, 294, 413
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 201, 411
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 125, 128, 316
Fsp4HI GCNGC 3 cut(s) 125, 128, 316
GlaI GCGC 1 cut(s) 22
GluI GCNGC 3 cut(s) 125, 128, 316
HaeIII GGCC 2 cut(s) 381, 441
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 205, 415
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 2 cut(s) 11, 350
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 4 cut(s) 30, 48, 349, 355
HpyAV CCTTC 2 cut(s) 155, 409
HpyCH4III ACNGT 3 cut(s) 175, 244, 397
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 352
Hsp92II CATG 2 cut(s) 205, 415
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 43, 259, 357
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 9 cut(s) 31, 54, 109, 165, 243, 270, 291, 368, 395
Lsp1109I GCAGC 3 cut(s) 114, 136, 327
MaeIII GTNAC 2 cut(s) 98, 236
MalI GATC 3 cut(s) 45, 261, 359
MboI GATC 3 cut(s) 43, 259, 357
MboII GAAGA 3 cut(s) 167, 436, 439
MhlI GDGCHC 1 cut(s) 201
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 3 cut(s) 24, 299, 324
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 4 cut(s) 92, 151, 328, 427
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 127
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 230, 383
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 230
NdeII GATC 3 cut(s) 43, 259, 357
NlaIII CATG 2 cut(s) 205, 415
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 98, 236
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 126, 129, 317
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PpuMI RGGWCCY 2 cut(s) 149, 164
Psp5II RGGWCCY 2 cut(s) 149, 164
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 149, 164
PspPPI RGGWCCY 2 cut(s) 149, 164
PvuII CAGCTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 3 cut(s) 125, 128, 316
Sau3AI GATC 3 cut(s) 43, 259, 357
Sau96I GGNCC 2 cut(s) 149, 164
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 230, 383
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 129, 154, 166, 183, 320
SinI GGWCC 2 cut(s) 149, 164
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 24, 299, 324
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 228, 381
TaaI ACNGT 3 cut(s) 175, 244, 397
TasI AATT 3 cut(s) 24, 299, 324
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 98, 236
TseI GCWGC 3 cut(s) 124, 127, 315
Tsp45I GTSAC 2 cut(s) 98, 236
TspDTI ATGAA 3 cut(s) 46, 319, 428
TspRI CASTG 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 149, 164
XapI RAATTY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.