Rmu_sc0002575.1_g000014

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
N/A
Physical Location & Seq
Forward (+)
62848 .. 64966
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
atgtatggaactgatcatgccaatgcaattcttgttggcaaggccttgaagcagttgccgagagaaaaggttcaattagccacgaagtttggtgttgtaagcttaggaccttctcgtttggtgataaacggaactccggattatttcctgtcatgttgcgaggctagcttgaagcgtcttggtgtcgactacattgatctgtactattattaccgcattgaccaaacagtgccgatagaggaaactatgggagagctgaagaaacttgttgaagaaggaaagatcaaatatattgggttatctgaagccagtctttacacaataaggagagcacgtgcagttcatcccatcacagctgtacaaatggagtggtcactttggactcgtgatattgaagaagagattattccactttgcaggttttccaccgaggtgatgatgacgttaattgtaccaatccccgggacaacaaggattaagaacttggatactaacattgtctccttaagtctgaatctcaaggaagacaacctcaaagaaatctctgatgctgttccactcgacccagtagctggtgataggagttttgaaagcataagtcatgtgcaatggaaattcgccaacactcctcaaaagactctgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

215

Amino Acids

24.31

Weight (kDa)

5.98

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 140 8.1e-32 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 572
AccI GTMKAC 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 278, 324
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 203, 360, 453
AfiI CCNNNNNNNGG 2 cut(s) 461, 572
AflII CTTAAG 1 cut(s) 505
AgsI TTSAA 6 cut(s) 49, 74, 172, 272, 395, 590
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 5 cut(s) 102, 168, 256, 356, 572
AluI AGCT 5 cut(s) 102, 168, 256, 356, 572
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 505
AlwNI CAGNNNCTG 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 3 cut(s) 133, 445, 587
AsuNHI GCTAGC 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 384
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 334
BccI CCATC 1 cut(s) 356
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 408
BfuI GTATCC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 462, 463
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 462, 463
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 538
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 462, 463
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 429, 460, 461
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 319, 349, 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 572
Bse1I ACTGG 2 cut(s) 309, 566
Bse3DI GCAATG 1 cut(s) 614
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 429, 460, 461
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 461, 572
BseMI GCAATG 1 cut(s) 614
BseNI ACTGG 2 cut(s) 309, 566
BseRI GAGGAG 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 137, 462
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 2 cut(s) 461, 572
BsmAI GTCTC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 3 cut(s) 13, 196, 282
BspACI CCGC 1 cut(s) 214
BspANI GGCC 1 cut(s) 44
BspEI TCCGGA 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 408
BspOI GCTAGC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 614
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 2 cut(s) 309, 566
BssECI CCNNGG 3 cut(s) 429, 460, 461
BssMI GATC 3 cut(s) 13, 196, 282
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 393
BstAFI CTTAAG 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 3 cut(s) 16, 199, 285
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 3 cut(s) 13, 196, 282
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 460, 461
BstV2I GAAGAC 1 cut(s) 531
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 107
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 202, 359, 452
CspCI CAANNNNNGTGG 4 cut(s) 70, 105, 350, 385
CviAII CATG 3 cut(s) 17, 153, 602
CviJI RGCY 9 cut(s) 44, 80, 102, 164, 168, 256, 308, 356, 572
CviKI_1 RGCY 9 cut(s) 44, 80, 102, 164, 168, 256, 308, 356, 572
CviQI GTAC 3 cut(s) 202, 359, 452
DdeI CTNAG 1 cut(s) 103
DpnI GATC 3 cut(s) 15, 198, 284
DpnII GATC 3 cut(s) 13, 196, 282
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 278, 324
Eco72I CACGTG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 107
FaeI CATG 3 cut(s) 20, 156, 605
FaiI YATR 7 cut(s) 6, 18, 154, 248, 291, 596, 603
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 478
FatI CATG 3 cut(s) 16, 152, 601
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 186
FokI GGATG 1 cut(s) 330
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 137, 462
HgaI GACGC 1 cut(s) 164
Hin1II CATG 3 cut(s) 20, 156, 605
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 3 cut(s) 382, 514, 637
HpaII CCGG 2 cut(s) 137, 462
HphI GGTGA 3 cut(s) 133, 445, 587
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 4 cut(s) 304, 513, 547, 642
Hpy188III TCNNGA 2 cut(s) 137, 386
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 120, 269
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 334, 443
HpyCH4V TGCA 4 cut(s) 26, 338, 417, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 2 cut(s) 334, 443
Hsp92II CATG 3 cut(s) 20, 156, 605
Kpn2I TCCGGA 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 3 cut(s) 13, 196, 282
LpnPI CCDG 7 cut(s) 150, 161, 322, 403, 475, 558, 579
LweI GCATC 1 cut(s) 538
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 334, 443
MaeIII GTNAC 1 cut(s) 372
MalI GATC 3 cut(s) 15, 198, 284
MboI GATC 3 cut(s) 13, 196, 282
MboII GAAGA 5 cut(s) 271, 284, 407, 410, 536
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 5 cut(s) 27, 74, 447, 614, 643
MlyI GAGTC 2 cut(s) 376, 631
MnlI CCTC 5 cut(s) 154, 232, 424, 542, 639
MroI TCCGGA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 3 cut(s) 446, 477, 506
MslI CAYNNNNRTG 2 cut(s) 21, 431
MspA1I CMGCKG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 505
MspI CCGG 2 cut(s) 137, 462
MspR9I CCNGG 2 cut(s) 462, 463
MwoI GCNNNNNNNGC 1 cut(s) 165
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 3 cut(s) 13, 196, 282
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 20, 156, 605
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 372
OliI CACNNNNGTG 1 cut(s) 431
PceI AGGCCT 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 572
PleI GAGTC 2 cut(s) 376, 631
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
PpsI GAGTC 2 cut(s) 376, 631
Ppu21I YACGTR 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspCI CACGTG 1 cut(s) 335
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 3 cut(s) 203, 360, 453
RsaNI GTAC 3 cut(s) 202, 359, 452
RseI CAYNNNNRTG 2 cut(s) 21, 431
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 446, 477, 506
Sau3AI GATC 3 cut(s) 13, 196, 282
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 376, 631
ScrFI CCNGG 2 cut(s) 462, 463
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 538
SinI GGWCC 1 cut(s) 107
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 21, 431
SmlI CTYRAG 2 cut(s) 505, 518
SmoI CTYRAG 2 cut(s) 505, 518
Sse9I AATT 5 cut(s) 27, 74, 447, 614, 643
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 460, 461
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 2 cut(s) 337, 446
TaqI TCGA 2 cut(s) 186, 561
TasI AATT 5 cut(s) 27, 74, 447, 614, 643
TatI WGTACW 2 cut(s) 201, 358
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 446, 477, 506
Tru9I TTAA 3 cut(s) 446, 477, 506
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 332
TspGWI ACGGA 1 cut(s) 144
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 572
Vha464I CTTAAG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 614
XmaI CCCGGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.