Rmu_sc0002579.1_g000006

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002579.1
N/A
Physical Location & Seq
Forward (+)
33521 .. 34912
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
atggagaccctttaccttgttctatctttaggtgctgcactcttcgcctttgccctcttcgcattcaaatccgaagatggcaagaacctcccaccaggaagcatggggtggcctattgtgggagaaactctcgagtttctttttggcaagccggaaaactttgtgttcaagaggatgaagcggtactcccctgacatcttcaagaccaagattcttggggagaaaaccgctgtcatttgtggaccgaatggacacaagtttctcttcaccaatgagcaaaaatacttcactgcatttcgaccacactccatgcagaagatgttcagttggccattgctttctgcagaaattgattacaaccaaatctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

9.04

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 181, 228
AcoI YGGCCR 1 cut(s) 329
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 67, 169, 202
AjnI CCWGG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 110, 329
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 331
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 114, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 21
BshFI GGCC 2 cut(s) 112, 331
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 119
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 2 cut(s) 112, 331
BsoBI CYCGRG 1 cut(s) 131
BspACI CCGC 2 cut(s) 181, 228
BspANI GGCC 2 cut(s) 112, 331
BspMAI CTGCAG 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 96
Bst6I CTCTTC 3 cut(s) 47, 62, 269
BstC8I GCNNGC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 44, 59
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 112, 331
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 103, 310
CviJI RGCY 3 cut(s) 112, 151, 331
CviKI_1 RGCY 3 cut(s) 112, 151, 331
CviQI GTAC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 3 cut(s) 47, 62, 269
EarI CTCTTC 3 cut(s) 47, 62, 269
Eco47I GGWCC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 106, 313
FaiI YATR 3 cut(s) 104, 311, 370
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 2 cut(s) 102, 309
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 112, 331
HapII CCGG 1 cut(s) 152
Hin1II CATG 2 cut(s) 106, 313
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 131, 169, 202
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 38, 293, 313, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 59
Hsp92II CATG 2 cut(s) 106, 313
LpnPI CCDG 4 cut(s) 81, 108, 165, 204
Lsp1109I GCAGC 1 cut(s) 22
MboII GAAGA 6 cut(s) 34, 49, 86, 190, 256, 328
MlsI TGGCCA 1 cut(s) 331
MluCI AATT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 331
MnlI CCTC 3 cut(s) 65, 98, 165
Mox20I TGGCCA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 331
Msp20I TGGCCA 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 44, 59
NlaIII CATG 2 cut(s) 106, 313
PaeR7I CTCGAG 1 cut(s) 131
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 96
SetI ASST 3 cut(s) 18, 34, 90
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 348
SsiI CCGC 2 cut(s) 181, 228
StyD4I CCNGG 1 cut(s) 94
TaqI TCGA 2 cut(s) 132, 298
TaqII GACCGA 1 cut(s) 259
TasI AATT 1 cut(s) 348
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.