Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002580.1

Orthogroup ID

OG0031217

Physical Location & Seq

Genomic Coordinates Reverse (-)

2370 .. 2738

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtcgtctcaggcagagataccagacaatccagaggaaatagtgggcaacccggaatcgatagaagcactgaagagggtggcaagcagtgtttcaagccatttgagggaaggagaggcagaggtcaaggcagagcaggcatgcttcctgccttgtactgatgatggtgcgcctgtgattggggagcttccaggggttaaagggtgttatgtggccactgggcataattgttggggaattctcaatggtcctgccactggtgctgcaatggctgagcttatgcttgatgggcaagctagcattgtcgatctcactcggtttagtccagccagatttgtcaccatagcgaagaagggtttaagacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0008150 GO:0008152 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0016491 GO:0031410 GO:0031982 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055114 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

122

Amino Acids

12.82

Weight (kDa)

4.96

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	13 - 93	1.4e-12	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031217)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002580.1_g000001 Rmu_sc0021412.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	106, 179, 257
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	187, 277, 296
AluI	AGCT	3 cut(s)	187, 277, 296
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	331
AsuNHI	GCTAGC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	158, 281
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	53, 192
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	53, 192
BmrI	ACTGGG	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 179, 257
Bse1I	ACTGG	2 cut(s)	223, 262
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	3 cut(s)	106, 179, 257
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	23, 264
BseNI	ACTGG	2 cut(s)	223, 262
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	106, 179, 257
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	307
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	22, 265
BspDI	ATCGAT	1 cut(s)	59
BspOI	GCTAGC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	223, 262
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	85, 138, 142, 294, 298
BstDEI	CTNAG	2 cut(s)	9, 273
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 260, 269, 289
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	51, 190
BstV1I	GCAGC	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	4 cut(s)	68, 94, 216, 255
Cac8I	GCNNGC	5 cut(s)	85, 138, 142, 294, 298
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	7 cut(s)	99, 187, 215, 272, 277, 296, 329
CviKI_1	RGCY	7 cut(s)	99, 187, 215, 272, 277, 296, 329
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	9, 273
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	144
FaiI	YATR	5 cut(s)	142, 210, 225, 281, 344
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	104, 346
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 260, 269, 289
HpyF3I	CTNAG	2 cut(s)	9, 273
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	85, 361
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	226, 237
MluNI	TGGCCA	1 cut(s)	215
MnlI	CCTC	5 cut(s)	28, 69, 99, 109, 115
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	2 cut(s)	198, 359
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	137, 260, 269, 289
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	198, 359
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	53, 192
SetI	ASST	5 cut(s)	126, 189, 279, 298, 367
SinI	GGWCC	1 cut(s)	248
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	226, 237
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	51, 190
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	59, 306
TasI	AATT	2 cut(s)	226, 237
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	198, 359
Tru9I	TTAA	2 cut(s)	198, 359
TscAI	CASTG	4 cut(s)	75, 94, 223, 262
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	337
TspRI	CASTG	4 cut(s)	75, 94, 223, 262
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.