Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002582.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18377 .. 26796

Gene Structure 8420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggccattgctttgtcaaagacgttcaagtcaccagtagtggataccatacaatgtcttcctcaacatcaacagattataatgtgctctgctgcaaagcatttccgtggtgtgaagaaagatacaactataggagagttaaacaaatcttacatagacatctgcaaagcaacactaattcccccggttgggagttttgaattttcaagtatgtgcaaagtgctaaatgaccagggcctcctcaaactcagtggccaatccagagatataaaatccaagagagtgacattgaatgtagatgaaggggacatcacatttgcattgcagggaatccgtaattactggtgcttgtactcatatgttcttctaggtaagcctatggttataacttttcgggcatactctaaggatcagattctcaagattctccaagagaggcttatggcactaccttacactgtttttcaaccacatgcattggaactttgtgccagaaaagttgctgctgcatctggagatatgaggaaagctctctgtatttccaggtttaagcaagcctctgattcccttcacatcttcacttcttctcaaaacctcctcccatttgccttcgcccgattcacaatgccttccatcgccgaccgcagcgttgaacttgaatccaacgccgtcggatcagtggcggaactgtccgctagaaaactgggtcgaagaaccgccggagctgacgaagctttcggccttcgattatccctccaaaccctccaaactcgaccagtggacaaaccaagaacacaggcacgtcggcgatggagaggcaagtcggatgggactggtaccccgcctcgagatggcctaacgacgaaggttcaatcaccgtcgtcgcttcgctggtctacaaaacgggtcgagaggcccgatggctgtttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

310

Amino Acids

34.5

Weight (kDa)

9.92

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_Cdc6	PF09079	15 - 107	1.7e-20	CDC6, C terminal winged helix domain
Cdc6-ORC-like_ATPase_lid	PF22606	134 - 180	1.2e-06	Cdc6/ORC-like, ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	80, 386
AasI	GACNNNNNNGTC	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccI	GTMKAC	1 cut(s)	896
AciI	CCGC	5 cut(s)	643, 683, 693, 717, 842
AclWI	GGATC	2 cut(s)	417, 682
AcoI	YGGCCR	2 cut(s)	3, 253
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	2 cut(s)	353, 838
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 851
AgsI	TTSAA	8 cut(s)	28, 200, 207, 292, 467, 653, 659, 872
AjiI	CACGTC	1 cut(s)	803
AjnI	CCWGG	2 cut(s)	231, 542
AluBI	AGCT	3 cut(s)	530, 725, 734
AluI	AGCT	3 cut(s)	530, 725, 734
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	417, 682
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	6 cut(s)	3, 235, 253, 739, 853, 914
ApeKI	GCWGC	4 cut(s)	92, 503, 506, 645
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	4 cut(s)	299, 331, 719, 751
Asp718I	GGTACC	1 cut(s)	836
AspS9I	GGNCC	2 cut(s)	235, 915
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	24, 867
AvaI	CYCGRG	1 cut(s)	846
BalI	TGGCCA	2 cut(s)	5, 255
BanI	GGYRCC	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	79, 490, 493, 657
BccI	CCATC	5 cut(s)	641, 804, 821, 845, 914
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	233, 544
BciVI	GTATCC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	2 cut(s)	368, 696
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	4 cut(s)	93, 504, 507, 646
BlsI	GCNGC	4 cut(s)	94, 505, 508, 647
Bme1390I	CCNGG	3 cut(s)	185, 233, 544
BmeT110I	CYCGRG	1 cut(s)	846
BmgBI	CACGTC	1 cut(s)	803
BmgT120I	GGNCC	2 cut(s)	235, 915
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	3 cut(s)	185, 233, 544
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	106, 183, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 851
Bse1I	ACTGG	5 cut(s)	35, 347, 708, 776, 838
Bse3DI	GCAATG	2 cut(s)	6, 320
BseBI	CCWGG	2 cut(s)	233, 544
BseDI	CCNNGG	3 cut(s)	106, 183, 232
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 851
BseMI	GCAATG	2 cut(s)	6, 320
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	5 cut(s)	35, 347, 708, 776, 838
BseRI	GAGGAG	2 cut(s)	230, 587
BseXI	GCAGC	4 cut(s)	79, 490, 493, 657
Bsh1285I	CGRYCG	1 cut(s)	643
BshFI	GGCC	6 cut(s)	5, 237, 255, 741, 855, 916
BshNI	GGYRCC	1 cut(s)	836
BsiEI	CGRYCG	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	185, 720
BslFI	GGGAC	2 cut(s)	320, 844
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 851
BsmFI	GGGAC	2 cut(s)	320, 844
BsnI	GGCC	6 cut(s)	5, 237, 255, 741, 855, 916
BsoBI	CYCGRG	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	409, 674
BspACI	CCGC	5 cut(s)	643, 683, 693, 717, 842
BspANI	GGCC	6 cut(s)	5, 237, 255, 741, 855, 916
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	838
BspPI	GGATC	2 cut(s)	417, 682
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	6, 320
BsrI	ACTGG	5 cut(s)	35, 347, 708, 776, 838
BssECI	CCNNGG	3 cut(s)	106, 183, 232
BssMI	GATC	2 cut(s)	409, 674
Bst2UI	CCWGG	2 cut(s)	233, 544
Bst4CI	ACNGT	3 cut(s)	460, 690, 879
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	248, 405
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	832
BstKTI	GATC	2 cut(s)	412, 677
BstMBI	GATC	2 cut(s)	409, 674
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	2 cut(s)	233, 544
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	3 cut(s)	183, 231, 542
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	79, 490, 493, 657
BstV2I	GAAGAC	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	6 cut(s)	5, 237, 255, 741, 855, 916
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	2 cut(s)	619, 823
BtrI	CACGTC	1 cut(s)	803
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	4 cut(s)	256, 456, 684, 783
Cac8I	GCNNGC	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	235, 915
Csp6I	GTAC	2 cut(s)	352, 837
CspCI	CAANNNNNGTGG	4 cut(s)	232, 267, 459, 494
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	2 cut(s)	352, 837
DdeI	CTNAG	2 cut(s)	248, 405
DpnI	GATC	2 cut(s)	411, 676
DpnII	GATC	2 cut(s)	409, 674
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	3, 253
EciI	GGCGGA	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	231, 542
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	1 cut(s)	476
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	320, 844
FatI	CATG	1 cut(s)	472
FauI	CCCGC	1 cut(s)	849
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	896
Fnu4HI	GCNGC	4 cut(s)	93, 504, 507, 646
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	4 cut(s)	93, 504, 507, 646
FspBI	CTAG	2 cut(s)	368, 696
GluI	GCNGC	4 cut(s)	93, 504, 507, 646
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	5, 237, 255, 741, 855, 916
HapII	CCGG	2 cut(s)	185, 720
Hin1II	CATG	1 cut(s)	476
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	6 cut(s)	330, 415, 424, 563, 618, 659
HpaII	CCGG	2 cut(s)	185, 720
HphI	GGTGA	2 cut(s)	24, 867
Hpy166II	GTNNAC	2 cut(s)	781, 897
Hpy188I	TCNGA	4 cut(s)	414, 562, 674, 826
Hpy188III	TCNNGA	5 cut(s)	261, 421, 513, 848, 910
Hpy8I	GTNNAC	2 cut(s)	781, 897
Hpy99I	CGWCG	5 cut(s)	674, 807, 865, 883, 886
HpyAV	CCTTC	6 cut(s)	296, 578, 619, 639, 752, 859
HpyCH4III	ACNGT	3 cut(s)	460, 690, 879
HpyCH4IV	ACGT	2 cut(s)	23, 802
HpyCH4V	TGCA	7 cut(s)	95, 165, 216, 320, 325, 476, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	2 cut(s)	248, 405
HpySE526I	ACGT	2 cut(s)	23, 802
Hsp92II	CATG	1 cut(s)	476
KpnI	GGTACC	1 cut(s)	840
Kzo9I	GATC	2 cut(s)	409, 674
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	4 cut(s)	79, 490, 493, 657
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	368, 696
MaeII	ACGT	2 cut(s)	23, 802
MaeIII	GTNAC	2 cut(s)	30, 283
MalI	GATC	2 cut(s)	411, 676
MboI	GATC	2 cut(s)	409, 674
MboII	GAAGA	6 cut(s)	50, 127, 356, 568, 576, 723
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	2 cut(s)	5, 255
MluCI	AATT	3 cut(s)	177, 200, 337
MluNI	TGGCCA	2 cut(s)	5, 255
MmeI	TCCRAC	3 cut(s)	652, 687, 804
Mox20I	TGGCCA	2 cut(s)	5, 255
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	2 cut(s)	5, 255
MseI	TTAA	2 cut(s)	140, 549
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	2 cut(s)	5, 255
MspI	CCGG	2 cut(s)	185, 720
MspR9I	CCNGG	3 cut(s)	185, 233, 544
MvaI	CCWGG	2 cut(s)	233, 544
MwoI	GCNNNNNNNGC	1 cut(s)	731
NciI	CCSGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	409, 674
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	2 cut(s)	30, 283
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PfeI	GAWTC	6 cut(s)	330, 415, 424, 563, 618, 659
PkrI	GCNGC	4 cut(s)	94, 505, 508, 647
PsiI	TTATAA	2 cut(s)	80, 386
Psp6I	CCWGG	2 cut(s)	231, 542
PspGI	CCWGG	2 cut(s)	231, 542
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	2 cut(s)	235, 915
RsaI	GTAC	2 cut(s)	353, 838
RsaNI	GTAC	2 cut(s)	352, 837
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	140, 549
SatI	GCNGC	4 cut(s)	93, 504, 507, 646
Sau3AI	GATC	2 cut(s)	409, 674
Sau96I	GGNCC	2 cut(s)	235, 915
ScrFI	CCNGG	3 cut(s)	185, 233, 544
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	846
SlaI	CTCGAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	419, 846
SmoI	CTYRAG	2 cut(s)	419, 846
Sse9I	AATT	3 cut(s)	177, 200, 337
SsiI	CCGC	5 cut(s)	643, 683, 693, 717, 842
SspMI	CTAG	2 cut(s)	368, 696
StyD4I	CCNGG	3 cut(s)	183, 231, 542
TaaI	ACNGT	3 cut(s)	460, 690, 879
TaiI	ACGT	2 cut(s)	26, 805
TaqI	TCGA	5 cut(s)	709, 745, 772, 847, 909
TasI	AATT	3 cut(s)	177, 200, 337
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	6 cut(s)	330, 415, 424, 563, 618, 659
Tru1I	TTAA	2 cut(s)	140, 549
Tru9I	TTAA	2 cut(s)	140, 549
TscAI	CASTG	4 cut(s)	256, 463, 684, 783
TseFI	GTSAC	2 cut(s)	30, 283
TseI	GCWGC	4 cut(s)	92, 503, 506, 645
Tsp45I	GTSAC	2 cut(s)	30, 283
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	2 cut(s)	95, 323
TspRI	CASTG	4 cut(s)	256, 463, 684, 783
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	846
XmiI	GTMKAC	1 cut(s)	896
XspI	CTAG	2 cut(s)	368, 696
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.