Rmu_sc0002589.1_g000006

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002589.1
N/A
Physical Location & Seq
Forward (+)
37199 .. 40779
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002589.1_g000006.1.cds

Sequence Viewer

Length: 1113 bp
atgaaagactatttaatcaaaatctgcggcatcaacattgttgttttcctcgccagatttgaagtccgtaatgatgagattgacatcattgtcatctccttcggctgcgagatgagcctcatgctttctcatatcttttatacaccttcggactcggcgcgggggcgctggggaggaggccggccgggctgggtttgggtttgcaggcgtcctggagggctgctgggtcgcggtaggctggcagggacgtgcagcaggagcagcgcggtggcggactgggcgactggaaatcggagggggaggttcggccgctgctgctgctgctcggtggcctgggctgctgctgctgctgctgcagttcggtcgccggatgctgctgcttacagctcctctccccaagttcatttggtgcggcgtttgggttccatcacccttgataatgttgaaagagagctgagaccggtcataggtgttgacacagaagctgcaaacatcacccgcaatcttgaagatgttcaagctgtgcttgaggatgctgagaacagacaactgaaggaggacactgtgaggctttggttgaatgatcttacacaactttgctatgagatggaagatgtgttggatgagaacactgaagttcaaaaagccgaatggagaaacaagaaaatagaggtgaagatggcattgttgccaagaagaaggataaaagaactaaatgaagagttcattttaattgctagtcgaaaacaaaattatagctttcaaaacccgaaaagagacttggaacaacttgaaccaaaactttcttcccctgttgatatagtatttggtcgggaatacgaaaagaatattttactacataagttgttgactgcaaattgtcatgaacttaggggtccccttatgatccccatgatagggatgcgaggaattggaaagacaactctttccaaactagtctataatgatgaaaaggtcaaggctcattttgacaagagagtatgggtctctgtctcagaccctcttgatgagatcaaagtcgccaaaggcatcattgaaggtcttggtagtactagtaccccaaattcaactgagttgcaaactcttctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

370

Amino Acids

41.63

Weight (kDa)

8.47

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccII CGCG 3 cut(s) 160, 231, 266
AciI CCGC 8 cut(s) 27, 160, 231, 266, 272, 310, 412, 499
AclWI GGATC 1 cut(s) 901
AcoI YGGCCR 2 cut(s) 182, 307
AcsI RAATTY 1 cut(s) 1084
AcuI CTGAAG 2 cut(s) 572, 654
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 2 cut(s) 1072, 1078
AfiI CCNNNNNNNGG 3 cut(s) 467, 917, 918
AgeI ACCGGT 1 cut(s) 460
AhlI ACTAGT 2 cut(s) 955, 1073
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 2 cut(s) 211, 332
AjuI GAANNNNNNNTTGG 4 cut(s) 764, 790, 796, 822
AluBI AGCT 5 cut(s) 387, 454, 485, 521, 759
AluI AGCT 5 cut(s) 387, 454, 485, 521, 759
Alw26I GTCTC 4 cut(s) 451, 771, 1012, 1018
AlwI GGATC 1 cut(s) 901
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 4 cut(s) 178, 182, 307, 330
ApoI RAATTY 1 cut(s) 1084
AsiGI ACCGGT 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 3 cut(s) 160, 168, 266
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 421, 487, 685
AvaII GGWCC 1 cut(s) 896
BccI CCATC 3 cut(s) 434, 601, 673
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 2 cut(s) 213, 334
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 4 cut(s) 451, 771, 1012, 1018
BcuI ACTAGT 2 cut(s) 955, 1073
BfaI CTAG 3 cut(s) 738, 956, 1074
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 169
BglI GCCNNNNNGGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 1072
Bme1390I CCNGG 3 cut(s) 186, 213, 334
Bme18I GGWCC 1 cut(s) 896
BmgBI CACGTC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 3 cut(s) 424, 897, 898
BmrFI CCNGG 3 cut(s) 186, 213, 334
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 5 cut(s) 39, 361, 523, 912, 1059
BmuI ACTGGG 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 208
BsaI GGTCTC 2 cut(s) 451, 1012
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 917, 918
Bse118I RCCGGY 2 cut(s) 180, 460
Bse1I ACTGG 2 cut(s) 281, 289
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 213, 334
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 4 cut(s) 376, 538, 628, 927
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 467, 917, 918
BseMII CTCAG 4 cut(s) 446, 528, 1029, 1083
BseNI ACTGG 2 cut(s) 281, 289
BseRI GAGGAG 2 cut(s) 189, 379
BseX3I CGGCCG 2 cut(s) 182, 307
BseYI CCCAGC 3 cut(s) 168, 189, 223
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 3 cut(s) 160, 231, 266
Bsh1285I CGRYCG 3 cut(s) 185, 310, 365
BshFI GGCC 4 cut(s) 180, 184, 309, 332
BshTI ACCGGT 1 cut(s) 460
BsiEI CGRYCG 3 cut(s) 185, 310, 365
BsiSI CCGG 4 cut(s) 181, 185, 368, 461
BslFI GGGAC 2 cut(s) 259, 882
BslI CCNNNNNNNGG 3 cut(s) 467, 917, 918
BsmAI GTCTC 4 cut(s) 451, 771, 1012, 1018
BsmFI GGGAC 2 cut(s) 259, 882
BsnI GGCC 4 cut(s) 180, 184, 309, 332
Bso31I GGTCTC 2 cut(s) 451, 1012
Bsp143I GATC 3 cut(s) 583, 906, 1032
BspACI CCGC 8 cut(s) 27, 160, 231, 266, 272, 310, 412, 499
BspANI GGCC 4 cut(s) 180, 184, 309, 332
BspCNI CTCAG 4 cut(s) 447, 529, 1028, 1084
BspFNI CGCG 3 cut(s) 160, 231, 266
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 3 cut(s) 424, 897, 898
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 901
BspTNI GGTCTC 2 cut(s) 451, 1012
BsrFI RCCGGY 2 cut(s) 180, 460
BsrI ACTGG 2 cut(s) 281, 289
BssAI RCCGGY 2 cut(s) 180, 460
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 3 cut(s) 583, 906, 1032
BssNI GRCGYC 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 213, 334
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 2 cut(s) 714, 1110
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 182, 206, 240
BstDEI CTNAG 5 cut(s) 455, 537, 890, 1015, 1092
BstF5I GGATG 4 cut(s) 376, 538, 628, 927
BstFNI CGCG 3 cut(s) 160, 231, 266
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 160, 168, 266
BstKTI GATC 3 cut(s) 586, 909, 1035
BstMAI GTCTC 4 cut(s) 451, 771, 1012, 1018
BstMBI GATC 3 cut(s) 583, 906, 1032
BstMCI CGRYCG 3 cut(s) 185, 310, 365
BstNI CCWGG 2 cut(s) 213, 334
BstSCI CCNGG 3 cut(s) 184, 211, 332
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 3 cut(s) 160, 231, 266
BstZI CGGCCG 2 cut(s) 182, 307
BsuRI GGCC 4 cut(s) 180, 184, 309, 332
BtrI CACGTC 1 cut(s) 249
BtsCI GGATG 4 cut(s) 376, 538, 628, 927
BtsIMutI CAGTG 2 cut(s) 561, 630
Cac8I GCNNGC 3 cut(s) 182, 206, 240
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 883
CfoI GCGC 3 cut(s) 160, 168, 266
Cfr10I RCCGGY 2 cut(s) 180, 460
Cfr13I GGNCC 1 cut(s) 896
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 1071, 1077
CspAI ACCGGT 1 cut(s) 460
CviAII CATG 3 cut(s) 121, 884, 913
CviQI GTAC 2 cut(s) 1071, 1077
DdeI CTNAG 5 cut(s) 455, 537, 890, 1015, 1092
DpnI GATC 3 cut(s) 585, 908, 1034
DpnII GATC 3 cut(s) 583, 906, 1032
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 2 cut(s) 182, 307
EagI CGGCCG 2 cut(s) 182, 307
Eam1104I CTCTTC 2 cut(s) 714, 1110
EarI CTCTTC 2 cut(s) 714, 1110
EciI GGCGGA 1 cut(s) 287
EclXI CGGCCG 2 cut(s) 182, 307
Eco31I GGTCTC 2 cut(s) 451, 1012
Eco47I GGWCC 1 cut(s) 896
Eco52I CGGCCG 2 cut(s) 182, 307
Eco57I CTGAAG 2 cut(s) 572, 654
EcoO109I RGGNCCY 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 211, 332
FaeI CATG 3 cut(s) 124, 887, 916
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 2 cut(s) 259, 882
FatI CATG 3 cut(s) 120, 883, 912
FauI CCCGC 2 cut(s) 153, 506
FokI GGATG 4 cut(s) 383, 545, 635, 934
FseI GGCCGGCC 1 cut(s) 184
FspBI CTAG 3 cut(s) 738, 956, 1074
GlaI GCGC 3 cut(s) 159, 167, 265
GsaI CCCAGC 3 cut(s) 172, 193, 227
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 4 cut(s) 180, 184, 309, 332
HapII CCGG 4 cut(s) 181, 185, 368, 461
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 160, 168, 266
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 3 cut(s) 124, 887, 916
Hin6I GCGC 3 cut(s) 158, 166, 264
HinP1I GCGC 3 cut(s) 158, 166, 264
HincII GTYRAC 2 cut(s) 475, 870
HindII GTYRAC 2 cut(s) 475, 870
HinfI GANTC 1 cut(s) 152
HpaII CCGG 4 cut(s) 181, 185, 368, 461
HphI GGTGA 3 cut(s) 421, 487, 685
Hpy166II GTNNAC 2 cut(s) 475, 870
Hpy188I TCNGA 3 cut(s) 151, 294, 1018
Hpy188III TCNNGA 4 cut(s) 506, 833, 884, 1025
Hpy8I GTNNAC 2 cut(s) 475, 870
HpyAV CCTTC 5 cut(s) 109, 156, 547, 693, 1052
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 6 cut(s) 204, 252, 356, 488, 875, 1099
HpyF3I CTNAG 5 cut(s) 455, 537, 890, 1015, 1092
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 3 cut(s) 124, 887, 916
HspAI GCGC 3 cut(s) 158, 166, 264
KflI GGGWCCC 1 cut(s) 896
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
Kzo9I GATC 3 cut(s) 583, 906, 1032
LmnI GCTCC 2 cut(s) 258, 392
LweI GCATC 5 cut(s) 39, 361, 523, 912, 1059
MaeI CTAG 3 cut(s) 738, 956, 1074
MaeII ACGT 1 cut(s) 248
MalI GATC 3 cut(s) 585, 908, 1034
MboI GATC 3 cut(s) 583, 906, 1032
MboII GAAGA 7 cut(s) 521, 623, 688, 708, 731, 798, 1097
MluCI AATT 5 cut(s) 732, 751, 877, 930, 1084
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 600
MroNI GCCGGC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 14, 731
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 4 cut(s) 181, 185, 368, 461
MspR9I CCNGG 3 cut(s) 186, 213, 334
MvaI CCWGG 2 cut(s) 213, 334
MvnI CGCG 3 cut(s) 160, 231, 266
NaeI GCCGGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 186
NdeII GATC 3 cut(s) 583, 906, 1032
NgoMIV GCCGGC 1 cut(s) 180
NlaIII CATG 3 cut(s) 124, 887, 916
NlaIV GGNNCC 3 cut(s) 424, 897, 898
NmeAIII GCCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 883
PdiI GCCGGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 460
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 896
Psp5II RGGWCCY 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 211, 332
PspFI CCCAGC 3 cut(s) 168, 189, 223
PspGI CCWGG 2 cut(s) 211, 332
PspN4I GGNNCC 3 cut(s) 424, 897, 898
PspPI GGNCC 1 cut(s) 896
PspPPI RGGWCCY 1 cut(s) 896
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 485
RigI GGCCGGCC 1 cut(s) 184
RsaI GTAC 2 cut(s) 1072, 1078
RsaNI GTAC 2 cut(s) 1071, 1077
SaqAI TTAA 2 cut(s) 14, 731
Sau3AI GATC 3 cut(s) 583, 906, 1032
Sau96I GGNCC 1 cut(s) 896
ScaI AGTACT 1 cut(s) 1072
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 186, 213, 334
SfaNI GCATC 5 cut(s) 39, 361, 523, 912, 1059
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SpeI ACTAGT 2 cut(s) 955, 1073
Sse9I AATT 5 cut(s) 732, 751, 877, 930, 1084
SsiI CCGC 8 cut(s) 27, 160, 231, 266, 272, 310, 412, 499
SspI AATATT 1 cut(s) 850
SspMI CTAG 3 cut(s) 738, 956, 1074
StyD4I CCNGG 3 cut(s) 184, 211, 332
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 742
TaqII GACCGA 1 cut(s) 351
TasI AATT 5 cut(s) 732, 751, 877, 930, 1084
TatI WGTACW 1 cut(s) 1070
TauI GCSGC 3 cut(s) 30, 312, 415
Tru1I TTAA 2 cut(s) 14, 731
Tru9I TTAA 2 cut(s) 14, 731
TscAI CASTG 2 cut(s) 568, 637
TspDTI ATGAA 6 cut(s) 17, 392, 715, 732, 900, 984
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 2 cut(s) 568, 637
VpaK11BI GGWCC 1 cut(s) 896
XapI RAATTY 1 cut(s) 1084
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 3 cut(s) 738, 956, 1074
ZrmI AGTACT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.