Rmu_sc0002590.1_g000001

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002590.1
N/A
Physical Location & Seq
Forward (+)
1 .. 3682
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1212 bp
gtcagtcaccacccaacactcattgcttgccactgtgaaggtagagggtggaagttctgggctgacagcaatctccggtcaaaattttgggggcgatcaattcagcttgaccctgttggagttctaagcgtggagtttgatgatggtgaaattttccagtggagcaaggtcacaacaaatatatataatctcattctcggtaaactttattgtgaccaccatggtacaatgcacatacgggatgtcgtggggaaaaaggttgctacactatttgggaagtgggatgacagcatgtattatgttaatggtgatgtgggtggaaagccaaatccttcagatgcttccttattgtggaaaggatgtaaaccccctaatatcacacggtacaacttaacatcgttcgctatcacactgaacgagctaacacctggactgcaggagaagctcccacccacggattccagactcaggccagaccagcggcacctggagaatggagaatatgaaaaggcgaatgcggagaagcagcggttggaaagaaggcaaagaatgtcgaggaaattacaagaaaatgggtggaaacccaaatggtttgagagagaaggtgaagatggacctttccgctatgttgggggctattgggaatcacggaaacagggtgaatgggatgagtgcccaaacatttttggtgaatttgatgaaggccttgatacattagaaggtgaaaatgtgaagagttcattttgtatgattttctctgataatgcaggaaaacaaaacgccttaggcagagctgtgcacatagatatagcttggcgtttccggttctgttgtatttgtgatggagctgatcctacctgggcattcaaacgaagaattatatatctctttaactgtaagatgatgactgtgctggggcggcgtggcttggaccttgacaagcttgcaagcttgtggtgggtctgcgactttgatcgttgggaggctctagcggtggcagactggtggtttcgacgttctcttcccttgatcgacggcggcgactggcaggacggcgtgaggtggggattcgacgggctcgttttggataagagttttccgatctggcggggtggatggtcgtccgacgtctactcgtggcggtggctagggtctcatcaacgtggtggaggcgtggtggctgctgcaacttggagttgggctagggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

403

Amino Acids

46.62

Weight (kDa)

7.64

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 1 - 80 3.7e-25 Oxysterol-binding protein
Oxysterol_BP PF01237 84 - 218 2.1e-38 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1131
AccB1I GGYRCC 1 cut(s) 483
AccI GTMKAC 1 cut(s) 1131
AciI CCGC 9 cut(s) 481, 518, 529, 622, 919, 992, 1038, 1108, 1141
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 3 cut(s) 83, 150, 692
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 1128
AfaI GTAC 2 cut(s) 226, 386
AfiI CCNNNNNNNGG 3 cut(s) 351, 454, 468
AgsI TTSAA 1 cut(s) 868
AjnI CCWGG 3 cut(s) 427, 486, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 8 cut(s) 106, 421, 445, 794, 812, 848, 943, 951
AluI AGCT 8 cut(s) 106, 421, 445, 794, 812, 848, 943, 951
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 1158
Alw44I GTGCAC 1 cut(s) 797
AlwI GGATC 1 cut(s) 845
AoxI GGCC 2 cut(s) 470, 703
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 3 cut(s) 526, 1181, 1184
ApoI RAATTY 3 cut(s) 83, 150, 692
AspS9I GGNCC 2 cut(s) 614, 931
AsuHPI GGTGA 6 cut(s) 158, 320, 617, 671, 701, 734
AvaII GGWCC 2 cut(s) 614, 931
AxyI CCTNAGG 1 cut(s) 784
BaeGI GKGCMC 2 cut(s) 677, 801
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 1080
BauI CACGAG 1 cut(s) 1135
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 3 cut(s) 538, 1168, 1171
BccI CCATC 4 cut(s) 137, 605, 836, 1110
BceAI ACGGC 2 cut(s) 1051, 1069
BciT130I CCWGG 3 cut(s) 429, 488, 859
BcoDI GTCTC 1 cut(s) 1158
BfaI CTAG 3 cut(s) 989, 1148, 1203
BfmI CTRYAG 1 cut(s) 434
BisI GCNGC 6 cut(s) 482, 527, 920, 1039, 1182, 1185
BlsI GCNGC 6 cut(s) 483, 528, 921, 1040, 1183, 1186
Bme1390I CCNGG 3 cut(s) 429, 488, 859
Bme18I GGWCC 2 cut(s) 614, 931
BmgT120I GGNCC 2 cut(s) 614, 931
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 3 cut(s) 429, 488, 859
BmsI GCATC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 509
BsaHI GRCGYC 1 cut(s) 1128
BsaI GGTCTC 1 cut(s) 1158
BsaJI CCNNGG 3 cut(s) 220, 453, 858
BsaWI WCCGGW 2 cut(s) 75, 822
BsaXI ACNNNNNCTCC 2 cut(s) 1161, 1191
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 454, 468
Bse1I ACTGG 3 cut(s) 157, 1007, 1049
Bse21I CCTNAGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 3 cut(s) 429, 488, 859
BseDI CCNNGG 3 cut(s) 220, 453, 858
BseGI GGATG 5 cut(s) 247, 289, 365, 673, 1121
BseLI CCNNNNNNNGG 3 cut(s) 351, 454, 468
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 3 cut(s) 157, 1007, 1049
BseSI GKGCMC 2 cut(s) 677, 801
BseXI GCAGC 3 cut(s) 538, 1168, 1171
BseYI CCCAGC 1 cut(s) 913
BshFI GGCC 2 cut(s) 472, 705
BshNI GGYRCC 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 801
BsiSI CCGG 2 cut(s) 76, 823
BslI CCNNNNNNNGG 3 cut(s) 351, 454, 468
BsmAI GTCTC 1 cut(s) 1158
BsmI GAATGC 2 cut(s) 520, 863
BsnI GGCC 2 cut(s) 472, 705
Bso31I GGTCTC 1 cut(s) 1158
Bsp1286I GDGCHC 3 cut(s) 677, 801, 1080
Bsp143I GATC 5 cut(s) 95, 850, 973, 1029, 1101
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 9 cut(s) 481, 518, 529, 622, 919, 992, 1038, 1108, 1141
BspANI GGCC 2 cut(s) 472, 705
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 485
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 1158
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 3 cut(s) 157, 1007, 1049
BssECI CCNNGG 3 cut(s) 220, 453, 858
BssMI GATC 5 cut(s) 95, 850, 973, 1029, 1101
BssNI GRCGYC 1 cut(s) 1128
BssSI CACGAG 1 cut(s) 1135
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 1135
Bst2UI CCWGG 3 cut(s) 429, 488, 859
Bst4CI ACNGT 4 cut(s) 35, 384, 896, 910
Bst6I CTCTTC 2 cut(s) 728, 1026
BstACI GRCGYC 1 cut(s) 1128
BstC8I GCNNGC 3 cut(s) 28, 945, 949
BstDEI CTNAG 3 cut(s) 125, 467, 784
BstDSI CCRYGG 2 cut(s) 220, 453
BstF5I GGATG 5 cut(s) 247, 289, 365, 673, 1121
BstKTI GATC 5 cut(s) 98, 853, 976, 1032, 1104
BstMAI GTCTC 1 cut(s) 1158
BstMBI GATC 5 cut(s) 95, 850, 973, 1029, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 442, 478, 919
BstNI CCWGG 3 cut(s) 429, 488, 859
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 3 cut(s) 427, 486, 857
BstSFI CTRYAG 1 cut(s) 434
BstSLI GKGCMC 2 cut(s) 677, 801
BstV1I GCAGC 3 cut(s) 538, 1168, 1171
Bsu36I CCTNAGG 1 cut(s) 784
BsuRI GGCC 2 cut(s) 472, 705
BtgI CCRYGG 2 cut(s) 220, 453
BtsCI GGATG 5 cut(s) 247, 289, 365, 673, 1121
BtsIMutI CAGTG 3 cut(s) 31, 164, 410
Cac8I GCNNGC 3 cut(s) 28, 945, 949
Cfr13I GGNCC 2 cut(s) 614, 931
Csp6I GTAC 2 cut(s) 225, 385
CviAII CATG 2 cut(s) 221, 292
CviQI GTAC 2 cut(s) 225, 385
DdeI CTNAG 3 cut(s) 125, 467, 784
DpnI GATC 5 cut(s) 97, 852, 975, 1031, 1103
DpnII GATC 5 cut(s) 95, 850, 973, 1029, 1101
Eam1104I CTCTTC 2 cut(s) 728, 1026
EarI CTCTTC 2 cut(s) 728, 1026
Eco130I CCWWGG 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 1080
Eco31I GGTCTC 1 cut(s) 1158
Eco47I GGWCC 2 cut(s) 614, 931
Eco57I CTGAAG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 784
EcoRII CCWGG 3 cut(s) 427, 486, 857
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 1080
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 224, 295
FatI CATG 2 cut(s) 220, 291
FauI CCCGC 1 cut(s) 1101
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 6 cut(s) 482, 527, 920, 1039, 1182, 1185
FokI GGATG 5 cut(s) 254, 296, 372, 680, 1128
FriOI GRGCYC 1 cut(s) 1080
Fsp4HI GCNGC 6 cut(s) 482, 527, 920, 1039, 1182, 1185
FspBI CTAG 3 cut(s) 989, 1148, 1203
GluI GCNGC 6 cut(s) 482, 527, 920, 1039, 1182, 1185
GsaI CCCAGC 1 cut(s) 917
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 2 cut(s) 472, 705
HapII CCGG 2 cut(s) 76, 823
Hin1I GRCGYC 1 cut(s) 1128
Hin1II CATG 2 cut(s) 224, 295
HindIII AAGCTT 2 cut(s) 941, 949
HinfI GANTC 4 cut(s) 458, 465, 644, 1068
HpaII CCGG 2 cut(s) 76, 823
HphI GGTGA 6 cut(s) 158, 320, 617, 671, 701, 734
Hpy166II GTNNAC 4 cut(s) 203, 365, 799, 1132
Hpy188I TCNGA 4 cut(s) 337, 760, 1101, 1126
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 4 cut(s) 203, 365, 799, 1132
Hpy99I CGWCG 4 cut(s) 1017, 1037, 1076, 1130
HpyAV CCTTC 6 cut(s) 32, 342, 534, 596, 695, 713
HpyCH4III ACNGT 4 cut(s) 35, 384, 896, 910
HpyCH4IV ACGT 3 cut(s) 1015, 1128, 1162
HpyCH4V TGCA 6 cut(s) 232, 436, 767, 799, 947, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 442, 478, 919
HpyF3I CTNAG 3 cut(s) 125, 467, 784
HpySE526I ACGT 3 cut(s) 1015, 1128, 1162
Hsp92I GRCGYC 1 cut(s) 1128
Hsp92II CATG 2 cut(s) 224, 295
Kzo9I GATC 5 cut(s) 95, 850, 973, 1029, 1101
LmnI GCTCC 3 cut(s) 162, 450, 845
Lsp1109I GCAGC 3 cut(s) 538, 1168, 1171
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 989, 1148, 1203
MaeII ACGT 3 cut(s) 1015, 1128, 1162
MaeIII GTNAC 3 cut(s) 5, 169, 212
MalI GATC 5 cut(s) 97, 852, 975, 1031, 1103
MboI GATC 5 cut(s) 95, 850, 973, 1029, 1101
MboII GAAGA 4 cut(s) 620, 745, 885, 1013
MhlI GDGCHC 3 cut(s) 677, 801, 1080
MluCI AATT 6 cut(s) 83, 99, 150, 560, 692, 876
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 3 cut(s) 97, 513, 1149
MnlI CCTC 5 cut(s) 38, 549, 976, 1053, 1163
MseI TTAA 3 cut(s) 303, 392, 891
MslI CAYNNNNRTG 1 cut(s) 1161
MspA1I CMGCKG 2 cut(s) 481, 529
MspI CCGG 2 cut(s) 76, 823
MspR9I CCNGG 3 cut(s) 429, 488, 859
Mva1269I GAATGC 2 cut(s) 520, 863
MvaI CCWGG 3 cut(s) 429, 488, 859
MwoI GCNNNNNNNGC 3 cut(s) 442, 478, 919
NcoI CCATGG 1 cut(s) 220
NdeII GATC 5 cut(s) 95, 850, 973, 1029, 1101
NlaIII CATG 2 cut(s) 224, 295
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 3 cut(s) 5, 169, 212
NspI RCATGY 1 cut(s) 295
PceI AGGCCT 1 cut(s) 705
PcsI WCGNNNNNNNCGW 2 cut(s) 1038, 1077
PctI GAATGC 2 cut(s) 520, 863
PfeI GAWTC 3 cut(s) 458, 644, 1068
PkrI GCNGC 6 cut(s) 483, 528, 921, 1040, 1183, 1186
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 427, 486, 857
PspFI CCCAGC 1 cut(s) 913
PspGI CCWGG 3 cut(s) 427, 486, 857
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 2 cut(s) 614, 931
PstI CTGCAG 1 cut(s) 438
RsaI GTAC 2 cut(s) 226, 386
RsaNI GTAC 2 cut(s) 225, 385
RseI CAYNNNNRTG 1 cut(s) 1161
SaqAI TTAA 3 cut(s) 303, 392, 891
SatI GCNGC 6 cut(s) 482, 527, 920, 1039, 1182, 1185
Sau3AI GATC 5 cut(s) 95, 850, 973, 1029, 1101
Sau96I GGNCC 2 cut(s) 614, 931
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 3 cut(s) 429, 488, 859
SduI GDGCHC 3 cut(s) 677, 801, 1080
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 434
SinI GGWCC 2 cut(s) 614, 931
SmiMI CAYNNNNRTG 1 cut(s) 1161
Sse9I AATT 6 cut(s) 83, 99, 150, 560, 692, 876
SseBI AGGCCT 1 cut(s) 705
SsiI CCGC 9 cut(s) 481, 518, 529, 622, 919, 992, 1038, 1108, 1141
SspMI CTAG 3 cut(s) 989, 1148, 1203
StuI AGGCCT 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 427, 486, 857
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 4 cut(s) 35, 384, 896, 910
TaiI ACGT 3 cut(s) 1018, 1131, 1165
TaqI TCGA 4 cut(s) 554, 1012, 1032, 1071
TasI AATT 6 cut(s) 83, 99, 150, 560, 692, 876
TauI GCSGC 3 cut(s) 484, 922, 1041
TfiI GAWTC 3 cut(s) 458, 644, 1068
Tru1I TTAA 3 cut(s) 303, 392, 891
Tru9I TTAA 3 cut(s) 303, 392, 891
TscAI CASTG 3 cut(s) 38, 164, 417
TseFI GTSAC 3 cut(s) 5, 169, 212
TseI GCWGC 3 cut(s) 526, 1181, 1184
Tsp45I GTSAC 3 cut(s) 5, 169, 212
TspDTI ATGAA 3 cut(s) 519, 714, 729
TspGWI ACGGA 2 cut(s) 470, 664
TspRI CASTG 3 cut(s) 38, 164, 417
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 2 cut(s) 614, 931
XapI RAATTY 3 cut(s) 83, 150, 692
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 3 cut(s) 989, 1148, 1203
ZraI GACGTC 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.