Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002598.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

51393 .. 51880

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002598.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

aagatgaggaaaatgctgcaaagcgtcagaaaccggtgcagtacaaacagcaacatccccgcggcattccaacacctagtcatcagcaatctggacaagcagaagcccgagagcaaccttaccggcccagctatcgttctcagccaccagtttctgcatggtctcgccaccgctatgagagtaggcaagatgaggaaaatgctgcaaagcgtcagaaaccggtgcagtacaaacagcaacatccccgcggcattccaacacctagtcctcagcaatctggacaagcagaagcccgagagcaaccttaccggcccagctatcgttctcagccaccagttgctgcatggtctcgccaccgctatgagagtaggcctcctcggccccctcctcggccttctgatggggggagaagatgttatcagagtgatcgttctgcttcaggtcgggactcaaacatgaggagtggaagccgccatctgcgttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

161

Amino Acids

18.75

Weight (kDa)

10.63

Isoelectric Point (pI)

90.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 248
AciI	CCGC	7 cut(s)	60, 62, 171, 246, 248, 357, 471
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	43, 229
AfiI	CCNNNNNNNGG	2 cut(s)	389, 400
AgeI	ACCGGT	2 cut(s)	33, 219
AluBI	AGCT	2 cut(s)	131, 317
AluI	AGCT	2 cut(s)	131, 317
Alw26I	GTCTC	2 cut(s)	167, 353
AlwNI	CAGNNNCTG	2 cut(s)	154, 340
Ama87I	CYCGRG	2 cut(s)	107, 293
AoxI	GGCC	5 cut(s)	124, 310, 370, 379, 391
ApeKI	GCWGC	3 cut(s)	16, 202, 340
AsiGI	ACCGGT	2 cut(s)	33, 219
AspS9I	GGNCC	3 cut(s)	125, 311, 380
AvaI	CYCGRG	2 cut(s)	107, 293
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	3 cut(s)	3, 189, 327
BccI	CCATC	2 cut(s)	394, 482
BcoDI	GTCTC	2 cut(s)	167, 353
BfaI	CTAG	3 cut(s)	77, 263, 486
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	6 cut(s)	17, 63, 203, 249, 341, 471
BlsI	GCNGC	6 cut(s)	18, 64, 204, 250, 342, 472
BmeT110I	CYCGRG	2 cut(s)	107, 293
BmgT120I	GGNCC	3 cut(s)	125, 311, 380
BmiI	GGNNCC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
Bpu10I	CCTNAGC	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	167, 353
BsaJI	CCNNGG	4 cut(s)	60, 246, 376, 388
BsaWI	WCCGGW	2 cut(s)	33, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 400
Bse118I	RCCGGY	4 cut(s)	33, 122, 219, 308
Bse1I	ACTGG	2 cut(s)	148, 334
BseDI	CCNNGG	4 cut(s)	60, 246, 376, 388
BseGI	GGATG	2 cut(s)	54, 240
BseLI	CCNNNNNNNGG	2 cut(s)	389, 400
BseMII	CTCAG	3 cut(s)	154, 283, 340
BseNI	ACTGG	2 cut(s)	148, 334
BseRI	GAGGAG	3 cut(s)	365, 377, 474
BseXI	GCAGC	3 cut(s)	3, 189, 327
BseYI	CCCAGC	2 cut(s)	127, 313
BsgI	GTGCAG	2 cut(s)	58, 244
Bsh1236I	CGCG	2 cut(s)	62, 248
BshFI	GGCC	5 cut(s)	126, 312, 372, 381, 393
BshTI	ACCGGT	2 cut(s)	33, 219
BsiHKCI	CYCGRG	2 cut(s)	107, 293
BsiSI	CCGG	4 cut(s)	34, 123, 220, 309
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	389, 400
BsmAI	GTCTC	2 cut(s)	167, 353
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	2 cut(s)	65, 251
BsnI	GGCC	5 cut(s)	126, 312, 372, 381, 393
Bso31I	GGTCTC	2 cut(s)	167, 353
BsoBI	CYCGRG	2 cut(s)	107, 293
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	7 cut(s)	60, 62, 171, 246, 248, 357, 471
BspANI	GGCC	5 cut(s)	126, 312, 372, 381, 393
BspCNI	CTCAG	3 cut(s)	153, 282, 339
BspFNI	CGCG	2 cut(s)	62, 248
BspLI	GGNNCC	1 cut(s)	382
BspTNI	GGTCTC	2 cut(s)	167, 353
BsrFI	RCCGGY	4 cut(s)	33, 122, 219, 308
BsrI	ACTGG	2 cut(s)	148, 334
BssAI	RCCGGY	4 cut(s)	33, 122, 219, 308
BssECI	CCNNGG	4 cut(s)	60, 246, 376, 388
BssMI	GATC	1 cut(s)	426
BstDEI	CTNAG	3 cut(s)	140, 269, 326
BstDSI	CCRYGG	2 cut(s)	60, 246
BstF5I	GGATG	2 cut(s)	54, 240
BstFNI	CGCG	2 cut(s)	62, 248
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	2 cut(s)	167, 353
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstUI	CGCG	2 cut(s)	62, 248
BstV1I	GCAGC	3 cut(s)	3, 189, 327
BsuRI	GGCC	5 cut(s)	126, 312, 372, 381, 393
BtgI	CCRYGG	2 cut(s)	60, 246
BtsCI	GGATG	2 cut(s)	54, 240
CaiI	CAGNNNCTG	2 cut(s)	154, 340
Cfr10I	RCCGGY	4 cut(s)	33, 122, 219, 308
Cfr13I	GGNCC	3 cut(s)	125, 311, 380
Cfr42I	CCGCGG	2 cut(s)	63, 249
CseI	GACGC	2 cut(s)	13, 199
Csp6I	GTAC	2 cut(s)	42, 228
CspAI	ACCGGT	2 cut(s)	33, 219
CviAII	CATG	3 cut(s)	158, 344, 456
CviQI	GTAC	2 cut(s)	42, 228
DdeI	CTNAG	3 cut(s)	140, 269, 326
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	372
Eco31I	GGTCTC	2 cut(s)	167, 353
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	2 cut(s)	107, 293
FaeI	CATG	3 cut(s)	161, 347, 459
FaiI	YATR	5 cut(s)	159, 176, 345, 362, 457
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	157, 343, 455
FauI	CCCGC	2 cut(s)	67, 253
Fnu4HI	GCNGC	6 cut(s)	17, 63, 203, 249, 341, 471
FokI	GGATG	2 cut(s)	41, 227
Fsp4HI	GCNGC	6 cut(s)	17, 63, 203, 249, 341, 471
FspBI	CTAG	3 cut(s)	77, 263, 486
GluI	GCNGC	6 cut(s)	17, 63, 203, 249, 341, 471
GsaI	CCCAGC	2 cut(s)	131, 317
HaeIII	GGCC	5 cut(s)	126, 312, 372, 381, 393
HapII	CCGG	4 cut(s)	34, 123, 220, 309
HgaI	GACGC	2 cut(s)	13, 199
Hin1II	CATG	3 cut(s)	161, 347, 459
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	4 cut(s)	34, 123, 220, 309
Hpy188I	TCNGA	4 cut(s)	29, 215, 399, 422
Hpy188III	TCNNGA	3 cut(s)	92, 278, 445
HpyAV	CCTTC	1 cut(s)	404
HpyCH4V	TGCA	6 cut(s)	19, 39, 157, 205, 225, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	3 cut(s)	140, 269, 326
Hsp92II	CATG	3 cut(s)	161, 347, 459
KspI	CCGCGG	2 cut(s)	63, 249
Kzo9I	GATC	1 cut(s)	426
Lsp1109I	GCAGC	3 cut(s)	3, 189, 327
MaeI	CTAG	3 cut(s)	77, 263, 486
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	2 cut(s)	94, 280
MnlI	CCTC	7 cut(s)	186, 278, 383, 386, 395, 398, 452
MslI	CAYNNNNRTG	2 cut(s)	173, 359
MspA1I	CMGCKG	2 cut(s)	62, 248
MspI	CCGG	4 cut(s)	34, 123, 220, 309
Mva1269I	GAATGC	2 cut(s)	65, 251
MvnI	CGCG	2 cut(s)	62, 248
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	3 cut(s)	161, 347, 459
NlaIV	GGNNCC	1 cut(s)	382
NmeAIII	GCCGAG	2 cut(s)	357, 369
PceI	AGGCCT	1 cut(s)	372
PctI	GAATGC	2 cut(s)	65, 251
PinAI	ACCGGT	2 cut(s)	33, 219
PkrI	GCNGC	6 cut(s)	18, 64, 204, 250, 342, 472
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PspFI	CCCAGC	2 cut(s)	127, 313
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	3 cut(s)	125, 311, 380
PstNI	CAGNNNCTG	2 cut(s)	154, 340
RsaI	GTAC	2 cut(s)	43, 229
RsaNI	GTAC	2 cut(s)	42, 228
RseI	CAYNNNNRTG	2 cut(s)	173, 359
SacII	CCGCGG	2 cut(s)	63, 249
SatI	GCNGC	6 cut(s)	17, 63, 203, 249, 341, 471
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	3 cut(s)	125, 311, 380
SchI	GAGTC	1 cut(s)	442
SetI	ASST	7 cut(s)	78, 120, 133, 264, 306, 319, 444
SfiI	GGCCNNNNNGGCC	1 cut(s)	378
Sfr303I	CCGCGG	2 cut(s)	63, 249
SgrBI	CCGCGG	2 cut(s)	63, 249
SmiMI	CAYNNNNRTG	2 cut(s)	173, 359
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	7 cut(s)	60, 62, 171, 246, 248, 357, 471
SspMI	CTAG	3 cut(s)	77, 263, 486
StuI	AGGCCT	1 cut(s)	372
TatI	WGTACW	2 cut(s)	41, 227
TauI	GCSGC	3 cut(s)	65, 251, 473
TseI	GCWGC	3 cut(s)	16, 202, 340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 341
XspI	CTAG	3 cut(s)	77, 263, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.