Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002608.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4437

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgaagcgcttcatctacataaacgatgatgattcatcgcactatccttactgtgacaatcgtatatcgaatagaaagtacaccgtgttgaactttctccccaagaatttatgggaacaattcagccgcttcatgaatcagtactttttgttgattgcttgccttcagctatggtcacttattactccagtaaatcctgccagcacatggggtccacttatcttcatttttgcagtctctgcatcaaaagaggcctgggatgattacaaccgatatctctcagacaagaaggcaaatgagaaagaagtttgggtcgtcaggcatggcatcaaaaaacatatacaagcgcaagatattcgtcttggtaacatagtttggctgcgggagaatgatgaagtgccatgtgacctagttttgattggtacctcagaagcacaaggcctatgctatatagagactgcagccctggatggagaaactgatctgaagaccagggtcataccaccagcttgtatggggatagatcttgaactgttgcacaaaattaagggtgtaattgagtgccctaatcctgataaggacattcgaagatttgatgcaaatatgcggttgtttcccccatttattgataatgacctctgcccattaaccataaagaatactattcttcagtcatgttacttgcgaaatacagagtgggcctgtggagtagcagtttacactggcaagtacttgaacttttcagattctattcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0034204 GO:0042623 GO:0043492 GO:0044464 GO:0045332 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase Hydrolase_3 PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

252

Amino Acids

29.17

Weight (kDa)

5.85

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	5 - 70	3.5e-25	Phospholipid-translocating ATPase N-terminal
E1-E2_ATPase	PF00122	99 - 161	4.7e-07	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	207
AciI	CCGC	3 cut(s)	127, 382, 607
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	3 cut(s)	149, 506, 653
AfaI	GTAC	4 cut(s)	80, 143, 424, 731
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	91, 530, 736
AjnI	CCWGG	3 cut(s)	254, 465, 491
AluBI	AGCT	2 cut(s)	169, 509
AluI	AGCT	2 cut(s)	169, 509
Alw26I	GTCTC	2 cut(s)	241, 449
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	3 cut(s)	252, 439, 699
ApeKI	GCWGC	2 cut(s)	379, 461
ApoI	RAATTY	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	9, 349
AspS9I	GGNCC	2 cut(s)	212, 699
AsuII	TTCGAA	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	366, 473
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	3 cut(s)	256, 467, 493
BcoDI	GTCTC	2 cut(s)	241, 449
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	10
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	3 cut(s)	127, 380, 462
BlsI	GCNGC	3 cut(s)	128, 381, 463
BmcAI	AGTACT	2 cut(s)	143, 731
Bme1390I	CCNGG	3 cut(s)	256, 467, 493
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	212, 699
BmiI	GGNNCC	2 cut(s)	213, 424
BmrFI	CCNGG	3 cut(s)	256, 467, 493
BmsI	GCATC	3 cut(s)	251, 336, 586
BoxI	GACNNNNGTC	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	255, 465, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	188, 727
BseBI	CCWGG	3 cut(s)	256, 467, 493
BseDI	CCNNGG	3 cut(s)	255, 465, 492
BseGI	GGATG	2 cut(s)	265, 475
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	294, 441
BseNI	ACTGG	2 cut(s)	188, 727
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	366, 473
BshFI	GGCC	3 cut(s)	254, 441, 701
BshNI	GGYRCC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	241, 449
BsnI	GGCC	3 cut(s)	254, 441, 701
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	2 cut(s)	481, 523
BspACI	CCGC	3 cut(s)	127, 382, 607
BspANI	GGCC	3 cut(s)	254, 441, 701
BspCNI	CTCAG	2 cut(s)	293, 440
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	213, 424
BspMAI	CTGCAG	1 cut(s)	463
BspT104I	TTCGAA	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	188, 727
BssECI	CCNNGG	3 cut(s)	255, 465, 492
BssMI	GATC	2 cut(s)	481, 523
Bst2UI	CCWGG	3 cut(s)	256, 467, 493
Bst4CI	ACNGT	3 cut(s)	53, 85, 534
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	160, 202
BstDEI	CTNAG	2 cut(s)	280, 427
BstF5I	GGATG	2 cut(s)	265, 475
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	9, 349
BstKTI	GATC	2 cut(s)	484, 526
BstMAI	GTCTC	2 cut(s)	241, 449
BstMBI	GATC	2 cut(s)	481, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	3 cut(s)	256, 467, 493
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	254, 465, 491
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	366, 473
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	3 cut(s)	254, 441, 701
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	265, 475
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	160, 202
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	9, 349
Cfr13I	GGNCC	2 cut(s)	212, 699
Csp6I	GTAC	4 cut(s)	79, 142, 423, 730
CviAII	CATG	5 cut(s)	133, 207, 323, 402, 675
CviJI	RGCY	8 cut(s)	126, 169, 254, 379, 441, 464, 509, 701
CviKI_1	RGCY	8 cut(s)	126, 169, 254, 379, 441, 464, 509, 701
CviQI	GTAC	4 cut(s)	79, 142, 423, 730
DdeI	CTNAG	2 cut(s)	280, 427
DpnI	GATC	2 cut(s)	483, 525
DpnII	GATC	2 cut(s)	481, 523
Eco147I	AGGCCT	2 cut(s)	254, 441
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	212
Eco47III	AGCGCT	1 cut(s)	8
Eco57I	CTGAAG	3 cut(s)	149, 506, 653
EcoRII	CCWGG	3 cut(s)	254, 465, 491
EcoRV	GATATC	1 cut(s)	275
FaeI	CATG	5 cut(s)	136, 210, 326, 405, 678
FatI	CATG	5 cut(s)	132, 206, 322, 401, 674
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	127, 380, 462
FokI	GGATG	2 cut(s)	272, 482
Fsp4HI	GCNGC	3 cut(s)	127, 380, 462
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	8, 348
GluI	GCNGC	3 cut(s)	127, 380, 462
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	254, 441, 701
HhaI	GCGC	2 cut(s)	9, 349
Hin1II	CATG	5 cut(s)	136, 210, 326, 405, 678
Hin6I	GCGC	2 cut(s)	7, 347
HinP1I	GCGC	2 cut(s)	7, 347
HinfI	GANTC	3 cut(s)	32, 136, 746
Hpy166II	GTNNAC	3 cut(s)	81, 215, 718
Hpy188I	TCNGA	4 cut(s)	283, 430, 486, 745
Hpy188III	TCNNGA	3 cut(s)	133, 527, 572
Hpy8I	GTNNAC	3 cut(s)	81, 215, 718
HpyAV	CCTTC	2 cut(s)	173, 283
HpyCH4III	ACNGT	3 cut(s)	53, 85, 534
HpyCH4V	TGCA	5 cut(s)	233, 242, 461, 538, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	280, 427
Hsp92II	CATG	5 cut(s)	136, 210, 326, 405, 678
HspAI	GCGC	2 cut(s)	7, 347
KpnI	GGTACC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	481, 523
Lsp1109I	GCAGC	2 cut(s)	366, 473
LweI	GCATC	3 cut(s)	251, 336, 586
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	5 cut(s)	53, 174, 365, 404, 677
MalI	GATC	2 cut(s)	483, 525
MboI	GATC	2 cut(s)	481, 523
MboII	GAAGA	4 cut(s)	214, 499, 600, 659
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	4 cut(s)	106, 119, 543, 555
MnlI	CCTC	3 cut(s)	244, 436, 647
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	546, 647
MspR9I	CCNGG	3 cut(s)	256, 467, 493
MvaI	CCWGG	3 cut(s)	256, 467, 493
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	2 cut(s)	481, 523
NlaIII	CATG	5 cut(s)	136, 210, 326, 405, 678
NlaIV	GGNNCC	2 cut(s)	213, 424
NmuCI	GTSAC	3 cut(s)	53, 174, 404
NspV	TTCGAA	1 cut(s)	586
PagI	TCATGA	1 cut(s)	132
PceI	AGGCCT	2 cut(s)	254, 441
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	32, 136, 746
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	128, 381, 463
PshAI	GACNNNNGTC	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	254, 465, 491
PspGI	CCWGG	3 cut(s)	254, 465, 491
PspN4I	GGNNCC	2 cut(s)	213, 424
PspPI	GGNCC	2 cut(s)	212, 699
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	4 cut(s)	80, 143, 424, 731
RsaNI	GTAC	4 cut(s)	79, 142, 423, 730
SaqAI	TTAA	2 cut(s)	546, 647
SatI	GCNGC	3 cut(s)	127, 380, 462
Sau3AI	GATC	2 cut(s)	481, 523
Sau96I	GGNCC	2 cut(s)	212, 699
ScaI	AGTACT	2 cut(s)	143, 731
ScrFI	CCNGG	3 cut(s)	256, 467, 493
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	5 cut(s)	171, 411, 428, 511, 639
SfaNI	GCATC	3 cut(s)	251, 336, 586
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	4 cut(s)	106, 119, 543, 555
SseBI	AGGCCT	2 cut(s)	254, 441
SsiI	CCGC	3 cut(s)	127, 382, 607
SspMI	CTAG	1 cut(s)	410
StuI	AGGCCT	2 cut(s)	254, 441
StyD4I	CCNGG	3 cut(s)	254, 465, 491
TaaI	ACNGT	3 cut(s)	53, 85, 534
TaqI	TCGA	2 cut(s)	68, 586
TasI	AATT	4 cut(s)	106, 119, 543, 555
TatI	WGTACW	3 cut(s)	78, 141, 729
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	32, 136, 746
Tru1I	TTAA	2 cut(s)	546, 647
Tru9I	TTAA	2 cut(s)	546, 647
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	3 cut(s)	53, 174, 404
TseI	GCWGC	2 cut(s)	379, 461
Tsp45I	GTSAC	3 cut(s)	53, 174, 404
TspDTI	ATGAA	6 cut(s)	17, 24, 121, 149, 214, 408
TspRI	CASTG	1 cut(s)	727
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	2 cut(s)	143, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.