Rmu_sc0002610.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002610.1
N/A
Physical Location & Seq
Reverse (-)
52831 .. 55535
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
atgaaactggttgttggtggcttttatcccgtattcccgaatgcttttctggttggtggtcctgcagacttctttgttattgaacttgcagatcagcttcaaaaattgaaggtggaaccagtattgccccattacttttcacacattaaagttctccagggcatggagctgagaatggccacaagtacaaggttaaagacttgtttgtatagcttcacttctcctggtggtccaatgtaccctacaagagttgttcgtcatgctgcctgggatgctttagatttgctttttccattaagatcaaatcaccacagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatggtcagttacttggttagtgacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.38

Weight (kDa)

4.68

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 2 cut(s) 187, 239
AfiI CCNNNNNNNGG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 83, 101, 109
AjnI CCWGG 3 cut(s) 156, 223, 266
AluBI AGCT 3 cut(s) 97, 169, 213
AluI AGCT 3 cut(s) 97, 169, 213
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 59, 230
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 59, 230
BalI TGGCCA 1 cut(s) 179
BbvI GCAGC 1 cut(s) 250
BciT130I CCWGG 3 cut(s) 158, 225, 268
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 3 cut(s) 158, 225, 268
Bme18I GGWCC 2 cut(s) 59, 230
BmgT120I GGNCC 2 cut(s) 59, 230
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 158, 225, 268
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 157, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 12, 119
BseBI CCWGG 3 cut(s) 158, 225, 268
BseDI CCNNGG 2 cut(s) 157, 267
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 12, 119
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 91, 299
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 67
BsrI ACTGG 2 cut(s) 12, 119
BssECI CCNNGG 2 cut(s) 157, 267
BssMI GATC 2 cut(s) 91, 299
Bst2UI CCWGG 3 cut(s) 158, 225, 268
Bst4CI ACNGT 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 2 cut(s) 94, 302
BstMBI GATC 2 cut(s) 91, 299
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 3 cut(s) 158, 225, 268
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 3 cut(s) 156, 223, 266
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 59, 230
Csp6I GTAC 2 cut(s) 186, 238
CviJI RGCY 5 cut(s) 21, 97, 169, 179, 213
CviKI_1 RGCY 5 cut(s) 21, 97, 169, 179, 213
CviQI GTAC 2 cut(s) 186, 238
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 93, 301
DpnII GATC 2 cut(s) 91, 299
EaeI YGGCCR 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 59, 230
EcoRII CCWGG 3 cut(s) 156, 223, 266
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 179
HphI GGTGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 65, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 91, 299
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 35, 75, 132, 143, 170, 210, 237, 253, 280
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 262
MalI GATC 2 cut(s) 93, 301
MboI GATC 2 cut(s) 91, 299
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 179
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 3 cut(s) 147, 194, 296
Msp20I TGGCCA 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 158, 225, 268
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 3 cut(s) 158, 225, 268
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 91, 299
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 1 cut(s) 598
PciI ACATGT 1 cut(s) 594
PctI GAATGC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 265
PscI ACATGT 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 156, 223, 266
PspGI CCWGG 3 cut(s) 156, 223, 266
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 59, 230
PstI CTGCAG 1 cut(s) 67
RsaI GTAC 2 cut(s) 187, 239
RsaNI GTAC 2 cut(s) 186, 238
SaqAI TTAA 3 cut(s) 147, 194, 296
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 91, 299
Sau96I GGNCC 2 cut(s) 59, 230
ScrFI CCNGG 3 cut(s) 158, 225, 268
SetI ASST 5 cut(s) 99, 114, 171, 194, 215
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 59, 230
Sse9I AATT 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 156, 223, 266
TaaI ACNGT 1 cut(s) 314
TasI AATT 1 cut(s) 104
TatI WGTACW 1 cut(s) 185
Tru1I TTAA 3 cut(s) 147, 194, 296
Tru9I TTAA 3 cut(s) 147, 194, 296
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 59, 230
XceI RCATGY 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.