Rmu_sc0002621.1_g000004

in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002621.1
N/A
Physical Location & Seq
Reverse (-)
7733 .. 10927
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
atggattacaggatcatatggaggaagctgaggtatcatatgttacgggaatctgagttatttgtgactatgattatgtattttctaagaatggtcttgtggatcacaaagatgggaagctcattagcacccaggtttgtttataattatgcaggaatttatcaattttacacttactatattgctgacttggacataccgataaagaggggtacatttattgagttccgaagtgggatgattaatgtatcaccaattgggcgaaactgtagccaagaggaaagagatgaatttgaaagatatgacaaggttcacaacgtatgcccgaaaatggtttctatcttcgtgagaagtttgctcaatttaacctga

Protein Analysis

123

Amino Acids

14.92

Weight (kDa)

9.33

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMM PF03332 53 - 113 2e-26 Eukaryotic phosphomannomutase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AclWI GGATC 2 cut(s) 20, 110
AcsI RAATTY 2 cut(s) 156, 290
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 28, 120
AluI AGCT 2 cut(s) 28, 120
AlwI GGATC 2 cut(s) 20, 110
ApoI RAATTY 2 cut(s) 156, 290
AseI ATTAAT 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 20, 45
BslI CCNNNNNNNGG 1 cut(s) 331
Bsp143I GATC 2 cut(s) 12, 102
BspCNI CTCAG 2 cut(s) 21, 46
BspPI GGATC 2 cut(s) 20, 110
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 12, 102
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 269
BstDEI CTNAG 3 cut(s) 29, 54, 86
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 2 cut(s) 15, 105
BstMBI GATC 2 cut(s) 12, 102
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 3 cut(s) 28, 120, 273
CviKI_1 RGCY 3 cut(s) 28, 120, 273
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 29, 54, 86
DpnI GATC 2 cut(s) 14, 104
DpnII GATC 2 cut(s) 12, 102
EcoRII CCWGG 1 cut(s) 131
FauNDI CATATG 2 cut(s) 17, 39
FokI GGATG 1 cut(s) 250
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 55, 230
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 29, 54, 86
HpySE526I ACGT 1 cut(s) 318
Kzo9I GATC 2 cut(s) 12, 102
LpnPI CCDG 3 cut(s) 118, 138, 145
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 42, 64
MalI GATC 2 cut(s) 14, 104
MboI GATC 2 cut(s) 12, 102
MboII GAAGA 1 cut(s) 334
MfeI CAATTG 1 cut(s) 255
MluCI AATT 6 cut(s) 145, 156, 164, 255, 290, 361
MnlI CCTC 4 cut(s) 15, 24, 201, 271
MseI TTAA 2 cut(s) 243, 365
MslI CAYNNNNRTG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 133
NdeI CATATG 2 cut(s) 17, 39
NdeII GATC 2 cut(s) 12, 102
NmuCI GTSAC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 243
PsiI TTATAA 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 243, 365
Sau3AI GATC 2 cut(s) 12, 102
ScrFI CCNGG 1 cut(s) 133
SetI ASST 7 cut(s) 30, 35, 122, 137, 312, 321, 371
SfcI CTRYAG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 6 cut(s) 145, 156, 164, 255, 290, 361
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 321
TasI AATT 6 cut(s) 145, 156, 164, 255, 290, 361
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 243, 365
Tru9I TTAA 2 cut(s) 243, 365
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 303
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 2 cut(s) 156, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.