Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002646.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32243 .. 33099

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggcggggaatgggttgtccagattgtgttgtttggtcctagtttggtcaatttggtgtttacccgtgaggcactgaggcttgatgccaaggaaagccagaggccggtgtatccatttgctgctattgtaggacaagatgagatgaaactatgtcttctgctgaatgtgattgatcccaagattggtggtgtcatgaggattgtgaaggttcaaggaggccacgaggtccggcttttagctcaatctgccacagagttctatgatgttcaataccgtcttggctttgatagaccaagcaaggccattgactggctcattcacaaggccaaggcctccattgaagctctcgaagattcttctactacacaccaacctcagcatcaccaagaaggcaatgccgagccagaaaccattaaaacttatcagcctttgccaaaggcccttaagatgagagcactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

6.97

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	76 - 133	1.7e-13	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	106, 185, 312
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	215, 272, 344
AluBI	AGCT	2 cut(s)	242, 347
AluI	AGCT	2 cut(s)	242, 347
Alw21I	GWGCWC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	6 cut(s)	104, 220, 303, 327, 333, 441
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	38, 229, 442
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	38, 229
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	460
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	38, 229
BmgT120I	GGNCC	3 cut(s)	38, 229, 442
BmsI	GCATC	2 cut(s)	76, 391
BpiI	GAAGAC	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	90, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 185, 312
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	90, 330
BseLI	CCNNNNNNNGG	3 cut(s)	106, 185, 312
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	68, 392
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	6 cut(s)	106, 222, 305, 329, 335, 443
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	107, 232
BslI	CCNNNNNNNGG	3 cut(s)	106, 185, 312
BsnI	GGCC	6 cut(s)	106, 222, 305, 329, 335, 443
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	6 cut(s)	106, 222, 305, 329, 335, 443
BspCNI	CTCAG	2 cut(s)	69, 391
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	90, 330
BssMI	GATC	1 cut(s)	175
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	90, 330
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	77, 378
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	6 cut(s)	106, 222, 305, 329, 335, 443
BtsIMutI	CAGTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	38, 229, 442
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	77, 378
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	90, 330
Eco147I	AGGCCT	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	38, 229
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	90, 330
ErhI	CCWWGG	2 cut(s)	90, 330
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	154, 197, 264, 463
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	6 cut(s)	106, 222, 305, 329, 335, 443
HapII	CCGG	2 cut(s)	107, 232
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	107, 232
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188III	TCNNGA	3 cut(s)	22, 196, 350
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	202, 386
HpyCH4III	ACNGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	77, 378
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	35, 113, 120, 245, 298, 420
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	76, 391
MaeI	CTAG	1 cut(s)	42
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	149, 351, 365
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	8 cut(s)	64, 72, 96, 192, 212, 220, 346, 387
MseI	TTAA	2 cut(s)	417, 447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	2 cut(s)	107, 232
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	427
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	38, 229, 442
SaqAI	TTAA	2 cut(s)	417, 447
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	3 cut(s)	38, 229, 442
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	5 cut(s)	213, 231, 244, 349, 379
SfaNI	GCATC	2 cut(s)	76, 391
SinI	GGWCC	2 cut(s)	38, 229
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	335
StyI	CCWWGG	2 cut(s)	90, 330
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	417, 447
Tru9I	TTAA	2 cut(s)	417, 447
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	312
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	38, 229
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.