Rmu_sc0002667.1_g000002

Ethylene-responsive small GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002667.1
N/A
Physical Location & Seq
Forward (+)
8906 .. 10940
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atggctgcaccaccaagggctcgcgccgattacgattatctgatcaagctcctcctcattggcgacagtggtgttggaaagagttgcctgcttttacgattctctgatggctccttcacaaccagtttcattaccactattggaattgacttcaagataagaaccattgatcttgatggcaaacgaattaagttgcaaatctgggacacagctggtcaggaacggttccggacaatcacgacaggtaaggttaaccaaaattcgaatgcaacgatgattagagttaagtcccggaagatgatgaaattttcagctgcacgccttgccaagtacaagaagaagcggagaaaacttagttttaaaacgcaccgcatcgccctgaaatccaacccgccccaatcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

134

Amino Acids

15.23

Weight (kDa)

10.93

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 103 2e-06 ADP-ribosylation factor family
Ras PF00071 16 - 93 4.8e-28 Ras family
Roc PF08477 16 - 101 2e-21 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 3 cut(s) 343, 370, 392
AcsI RAATTY 2 cut(s) 259, 305
AfaI GTAC 1 cut(s) 332
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 3 cut(s) 49, 212, 314
AluI AGCT 3 cut(s) 49, 212, 314
Aor13HI TCCGGA 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 5, 314
ApoI RAATTY 2 cut(s) 259, 305
AspLEI GCGC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 263
BanII GRGCYC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 101, 170
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 292
BisI GCNGC 2 cut(s) 6, 315
BlsI GCNGC 2 cut(s) 7, 316
Bme1390I CCNGG 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 112, 227
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 41, 44
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 229, 292
BslFI GGGAC 2 cut(s) 218, 274
BsmFI GGGAC 2 cut(s) 218, 274
BsmI GAATGC 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 22
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 42, 169
BspACI CCGC 3 cut(s) 343, 370, 392
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 112, 227
BspT104I TTCGAA 1 cut(s) 263
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 42, 169
BssT1I CCWWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 68, 225
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 22, 89, 319
BstDEI CTNAG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 45, 172
BstMBI GATC 2 cut(s) 42, 169
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 290
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 22, 89, 319
CfoI GCGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 6 cut(s) 5, 20, 49, 111, 212, 314
CviKI_1 RGCY 6 cut(s) 5, 20, 49, 111, 212, 314
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 44, 171
DpnII GATC 2 cut(s) 42, 169
DraI TTTAAA 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 14
FaqI GGGAC 2 cut(s) 218, 274
FauI CCCGC 1 cut(s) 399
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 6, 315
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 6, 315
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 6, 315
HapII CCGG 2 cut(s) 229, 292
HhaI GCGC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 99
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 2 cut(s) 229, 292
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 42, 106
Hpy188III TCNNGA 5 cut(s) 154, 173, 218, 229, 238
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 68, 225
HpyCH4V TGCA 4 cut(s) 8, 196, 269, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 353
HspAI GCGC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 42
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 42, 169
LmnI GCTCC 2 cut(s) 54, 116
LpnPI CCDG 9 cut(s) 101, 136, 187, 198, 203, 228, 242, 305, 392
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 381
MalI GATC 2 cut(s) 44, 171
MboI GATC 2 cut(s) 42, 169
MboII GAAGA 2 cut(s) 307, 349
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 4 cut(s) 144, 186, 259, 305
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 62, 65
MroI TCCGGA 1 cut(s) 228
MseI TTAA 4 cut(s) 189, 252, 285, 360
MspA1I CMGCKG 2 cut(s) 212, 314
MspI CCGG 2 cut(s) 229, 292
MspR9I CCNGG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 271
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 42, 169
NlaIV GGNNCC 2 cut(s) 112, 227
NspV TTCGAA 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 290
PkrI GCNGC 2 cut(s) 7, 316
PspN4I GGNNCC 2 cut(s) 112, 227
PvuII CAGCTG 2 cut(s) 212, 314
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 4 cut(s) 189, 252, 285, 360
SatI GCNGC 2 cut(s) 6, 315
Sau3AI GATC 2 cut(s) 42, 169
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 51, 214, 247, 252, 316
SfaNI GCATC 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 263
Sse9I AATT 4 cut(s) 144, 186, 259, 305
SsiI CCGC 3 cut(s) 343, 370, 392
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 68, 225
TaqI TCGA 1 cut(s) 263
TasI AATT 4 cut(s) 144, 186, 259, 305
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 4 cut(s) 189, 252, 285, 360
Tru9I TTAA 4 cut(s) 189, 252, 285, 360
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 5, 314
TspDTI ATGAA 2 cut(s) 118, 317
TspRI CASTG 1 cut(s) 73
XapI RAATTY 2 cut(s) 259, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.