Rmu_sc0002688.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002688.1
N/A
Physical Location & Seq
Reverse (-)
25349 .. 25804
456 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
atgtttgactcaacaggctcggattaccatagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattatccataatccaggcacctaacccggatcttgtgttcgtgcgaacacctacaaagcatgctcaaacagttatcttgatgcgacgccatatggacaagtcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagtgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaataacctgcactttgctgatttcaagtctgttgctgaatataattcagaagctcttcgcatacactccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattgtggtatcaaagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

151

Amino Acids

17.31

Weight (kDa)

6.05

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 44 - 143 6.6e-06 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 160
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 34, 363
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AhdI GACNNNNNGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 4 cut(s) 217, 341, 397, 451
AluI AGCT 4 cut(s) 217, 341, 397, 451
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 91
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 89, 101
BmeRI GACNNNNNGTC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 363
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 34, 363
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 34, 363
BsmI GAATGC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 103, 198
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 2 cut(s) 103, 198
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 228, 348
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 106, 201
BstMBI GATC 2 cut(s) 103, 198
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 168
CviAII CATG 2 cut(s) 134, 358
CviJI RGCY 6 cut(s) 18, 217, 341, 397, 434, 451
CviKI_1 RGCY 6 cut(s) 18, 217, 341, 397, 434, 451
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 105, 200
DpnII GATC 2 cut(s) 103, 198
DriI GACNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 228, 348
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 2 cut(s) 228, 348
Eco47III AGCGCT 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 137, 361
FatI CATG 2 cut(s) 133, 357
FauNDI CATATG 1 cut(s) 165
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 230
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 137, 361
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 22, 182, 337
Hpy188III TCNNGA 2 cut(s) 151, 202
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 271, 430
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 209, 298
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 137, 361
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 103, 198
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 6 cut(s) 74, 101, 114, 282, 308, 393
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 37, 174, 382
MalI GATC 2 cut(s) 105, 200
MboI GATC 2 cut(s) 103, 198
MboII GAAGA 2 cut(s) 245, 335
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 331, 399
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 272, 275, 357
MroXI GAANNNNTTC 1 cut(s) 342
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 103, 198
NlaIII CATG 2 cut(s) 137, 361
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 174, 382
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 103, 198
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SfaNI GCATC 1 cut(s) 144
SphI GCATGC 1 cut(s) 137
Sse9I AATT 2 cut(s) 331, 399
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 331, 399
TfiI GAWTC 1 cut(s) 257
TseFI GTSAC 2 cut(s) 174, 382
Tsp45I GTSAC 2 cut(s) 174, 382
XceI RCATGY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.