Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002688.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

61102 .. 76047

Gene Structure 14946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atggaaccacgaactctgcaactaatggaacttcaaacccagcaacaaatggaactacaagcccagcaacccaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccagctcaactaagaatcctccaggagctttactatgaaaaggattacccgctacacaatttgaatagtgtaccgggattgcaacaacaccaaacccgcagtgcgtttgcgttgttgttgtttgacaggtttgtagaaggttgccaggtttttcacccgctgaagtgttggattttggtgctggcatcggtttggctttctggtgagaagttcatctggttatcttttgatgcaatccatcctgctgatgttggacttaaagaggaaaatccagatgatgatcgagggcttggttttttcagagacaatctaaatagagtttctcgatggactcaaccaataacatacttcaatttatatgaaggtgatagttttacgatgtgtatattctgttttcctacttcctcagtcattccacttcatgatcaccctggcatgactgtttttagcaaagttctgtatggttctttgcatgtgagagcttacgattgggtggagccttcccacgaaagcaagggatcaaattactttccaggagatgagatgacgcttattctcccctttttgaatttggacattaagtactttgaccttggtcttcctcaccatgataccactgatgataaagttaccgttgaaagtgcagaggctacttttaataacattacagcaggttacactttagacagtaaagggaggctgcaatctcctaagactcctatgaacagtggaggacaatcaatattgtcagagacaaaatggcctacctttaaggaattttttgacccccagggggccttcattgcaatgtggtataagatatttatgatttcatgtctgattttagtaaccgcagaccctttgttcttctacatcccctacatcaacaaagataaaaagggctttgatggggacaagagggtgagaactgcagctctagtcctccgatcactcaccgatatgactgtttggctccaaaaccagctggtgtgcaaacagtctcttttgagcgagtggttgcgcaggcgtgccagcaccgcggggtgcagtcgttggggagagcaccaacctcgtcacagggttcttttcttgcctttcggaaaaggacttctttgccttacgcggggcgttacccttgcttcgctggaagtaacagtggcggttgtgctcgcagtcggctcctggggagactgggactggaagtacggtcgccgggttgatctggtgaggctgacagtcggctcgcgaggagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

470

Amino Acids

53.55

Weight (kDa)

6.32

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	128 - 226	6.5e-33	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1178
Acc36I	ACCTGC	1 cut(s)	818
AccII	CGCG	3 cut(s)	1196, 1279, 1402
AciI	CCGC	8 cut(s)	206, 253, 314, 1008, 1194, 1196, 1279, 1316
AclWI	GGATC	1 cut(s)	682
AcsI	RAATTY	2 cut(s)	724, 932
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	3 cut(s)	228, 740, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	141, 949, 1279
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	5 cut(s)	35, 220, 508, 724, 794
AjnI	CCWGG	6 cut(s)	177, 300, 586, 688, 945, 1337
AluBI	AGCT	5 cut(s)	161, 184, 638, 1091, 1141
AluI	AGCT	5 cut(s)	161, 184, 638, 1091, 1141
Alw21I	GWGCWC	2 cut(s)	1221, 1326
Alw26I	GTCTC	5 cut(s)	453, 902, 1161, 1338, 1401
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	3 cut(s)	128, 917, 951
ApeKI	GCWGC	3 cut(s)	98, 856, 1088
ApoI	RAATTY	2 cut(s)	724, 932
AsiGI	ACCGGT	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	1179
AspS9I	GGNCC	1 cut(s)	951
AsuC2I	CCSGG	3 cut(s)	103, 231, 1370
AsuHPI	GGTGA	8 cut(s)	302, 371, 533, 575, 752, 1090, 1102, 1393
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	2 cut(s)	1221, 1326
BbvI	GCAGC	3 cut(s)	110, 843, 1100
BccI	CCATC	3 cut(s)	402, 477, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	1208, 1242
BciT130I	CCWGG	6 cut(s)	179, 302, 588, 690, 947, 1339
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	3 cut(s)	103, 231, 1370
BcoDI	GTCTC	5 cut(s)	453, 902, 1161, 1338, 1401
BfaI	CTAG	2 cut(s)	1094, 1411
BfmI	CTRYAG	1 cut(s)	1086
BfuAI	ACCTGC	1 cut(s)	818
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	99, 857, 1089
BlsI	GCNGC	3 cut(s)	100, 858, 1090
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	9 cut(s)	103, 179, 231, 302, 588, 690, 947, 1339, 1370
BmgT120I	GGNCC	1 cut(s)	951
BmiI	GGNNCC	5 cut(s)	6, 654, 952, 1130, 1336
BmrFI	CCNGG	9 cut(s)	103, 179, 231, 302, 588, 690, 947, 1339, 1370
BmrI	ACTGGG	1 cut(s)	1357
BmsI	GCATC	2 cut(s)	350, 376
BmuI	ACTGGG	1 cut(s)	1357
BoxI	GACNNNNGTC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	746
BpmI	CTGGAG	1 cut(s)	161
BpuMI	CCSGG	3 cut(s)	103, 231, 1370
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	7 cut(s)	75, 586, 748, 945, 946, 1194, 1338
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 949, 1279
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	1352, 1358
Bse3DI	GCAATG	2 cut(s)	957, 969
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	6 cut(s)	179, 302, 588, 690, 947, 1339
BseDI	CCNNGG	7 cut(s)	75, 586, 748, 945, 946, 1194, 1338
BseGI	GGATG	2 cut(s)	394, 1029
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	3 cut(s)	141, 949, 1279
BseMI	GCAATG	2 cut(s)	957, 969
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	1352, 1358
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	110, 843, 1100
BseYI	CCCAGC	2 cut(s)	39, 63
BsgI	GTGCAG	2 cut(s)	819, 1222
Bsh1236I	CGCG	3 cut(s)	1196, 1279, 1402
Bsh1285I	CGRYCG	1 cut(s)	1366
BshFI	GGCC	3 cut(s)	130, 919, 953
BshTI	ACCGGT	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	1366
BsiHKAI	GWGCWC	2 cut(s)	1221, 1326
BsiSI	CCGG	4 cut(s)	102, 142, 230, 1369
BslFI	GGGAC	2 cut(s)	1082, 1364
BslI	CCNNNNNNNGG	3 cut(s)	141, 949, 1279
BsmAI	GTCTC	5 cut(s)	453, 902, 1161, 1338, 1401
BsmFI	GGGAC	2 cut(s)	1082, 1364
BsnI	GGCC	3 cut(s)	130, 919, 953
Bsp1286I	GDGCHC	2 cut(s)	1221, 1326
Bsp143I	GATC	5 cut(s)	436, 580, 674, 1103, 1375
Bsp68I	TCGCGA	1 cut(s)	1402
BspACI	CCGC	8 cut(s)	206, 253, 314, 1008, 1194, 1196, 1279, 1316
BspANI	GGCC	3 cut(s)	130, 919, 953
BspCNI	CTCAG	1 cut(s)	575
BspFNI	CGCG	3 cut(s)	1196, 1279, 1402
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	6, 654, 952, 1130, 1336
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	957, 969
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	1352, 1358
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	7 cut(s)	75, 586, 748, 945, 946, 1194, 1338
BssMI	GATC	5 cut(s)	436, 580, 674, 1103, 1375
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	6 cut(s)	179, 302, 588, 690, 947, 1339
Bst4CI	ACNGT	9 cut(s)	598, 790, 845, 884, 1123, 1155, 1312, 1364, 1393
BstC8I	GCNNGC	6 cut(s)	339, 1181, 1185, 1189, 1326, 1400
BstDEI	CTNAG	3 cut(s)	167, 562, 867
BstDSI	CCRYGG	1 cut(s)	1194
BstF5I	GGATG	2 cut(s)	394, 1029
BstFNI	CGCG	3 cut(s)	1196, 1279, 1402
BstHHI	GCGC	1 cut(s)	1179
BstKTI	GATC	5 cut(s)	439, 583, 677, 1106, 1378
BstMAI	GTCTC	5 cut(s)	453, 902, 1161, 1338, 1401
BstMBI	GATC	5 cut(s)	436, 580, 674, 1103, 1375
BstMCI	CGRYCG	1 cut(s)	1366
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 959, 1193
BstNI	CCWGG	6 cut(s)	179, 302, 588, 690, 947, 1339
BstNSI	RCATGY	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	750
BstSCI	CCNGG	9 cut(s)	101, 177, 229, 300, 586, 688, 945, 1337, 1368
BstSFI	CTRYAG	1 cut(s)	1086
BstUI	CGCG	3 cut(s)	1196, 1279, 1402
BstV1I	GCAGC	3 cut(s)	110, 843, 1100
BstV2I	GAAGAC	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	130, 919, 953
BtgI	CCRYGG	1 cut(s)	1194
BtsCI	GGATG	2 cut(s)	394, 1029
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	4 cut(s)	262, 771, 889, 1317
BtuMI	TCGCGA	1 cut(s)	1402
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	6 cut(s)	339, 1181, 1185, 1189, 1326, 1400
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	1179
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	951
Cfr42I	CCGCGG	1 cut(s)	1197
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	3 cut(s)	227, 739, 1360
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	5 cut(s)	578, 592, 629, 764, 990
CviQI	GTAC	3 cut(s)	227, 739, 1360
DdeI	CTNAG	3 cut(s)	167, 562, 867
DpnI	GATC	5 cut(s)	438, 582, 676, 1105, 1377
DpnII	GATC	5 cut(s)	436, 580, 674, 1103, 1375
Eco130I	CCWWGG	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	6 cut(s)	177, 300, 586, 688, 945, 1337
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	5 cut(s)	581, 595, 632, 767, 993
FalI	AAGNNNNNCTT	2 cut(s)	1251, 1283
FaqI	GGGAC	2 cut(s)	1082, 1364
FatI	CATG	5 cut(s)	577, 591, 628, 763, 989
FauI	CCCGC	5 cut(s)	213, 260, 321, 1189, 1272
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	3 cut(s)	99, 857, 1089
FokI	GGATG	2 cut(s)	381, 1016
Fsp4HI	GCNGC	3 cut(s)	99, 857, 1089
FspBI	CTAG	2 cut(s)	1094, 1411
FspI	TGCGCA	1 cut(s)	1178
GlaI	GCGC	1 cut(s)	1178
GluI	GCNGC	3 cut(s)	99, 857, 1089
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	130, 919, 953
HapII	CCGG	4 cut(s)	102, 142, 230, 1369
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	1179
Hin1II	CATG	5 cut(s)	581, 595, 632, 767, 993
Hin6I	GCGC	1 cut(s)	1177
HinP1I	GCGC	1 cut(s)	1177
HinfI	GANTC	4 cut(s)	148, 171, 487, 871
HpaII	CCGG	4 cut(s)	102, 142, 230, 1369
HphI	GGTGA	8 cut(s)	302, 371, 533, 575, 752, 1090, 1102, 1393
Hpy166II	GTNNAC	2 cut(s)	147, 227
Hpy188I	TCNGA	5 cut(s)	458, 907, 996, 1103, 1256
Hpy188III	TCNNGA	4 cut(s)	428, 480, 578, 1401
Hpy8I	GTNNAC	2 cut(s)	147, 227
HpyAV	CCTTC	4 cut(s)	287, 512, 666, 964
HpyCH4III	ACNGT	9 cut(s)	598, 790, 845, 884, 1123, 1155, 1312, 1364, 1393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 959, 1193
HpyF3I	CTNAG	3 cut(s)	167, 562, 867
Hsp92II	CATG	5 cut(s)	581, 595, 632, 767, 993
HspAI	GCGC	1 cut(s)	1177
Ksp22I	TGATCA	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	1197
Kzo9I	GATC	5 cut(s)	436, 580, 674, 1103, 1375
LmnI	GCTCC	4 cut(s)	181, 652, 1134, 1340
Lsp1109I	GCAGC	3 cut(s)	110, 843, 1100
LweI	GCATC	2 cut(s)	350, 376
MaeI	CTAG	2 cut(s)	1094, 1411
MaeIII	GTNAC	6 cut(s)	784, 830, 1003, 1229, 1285, 1306
MalI	GATC	5 cut(s)	438, 582, 676, 1105, 1377
MboI	GATC	5 cut(s)	436, 580, 674, 1103, 1375
MboII	GAAGA	2 cut(s)	746, 1015
MhlI	GDGCHC	2 cut(s)	1221, 1326
MluCI	AATT	5 cut(s)	214, 508, 679, 724, 932
MlyI	GAGTC	3 cut(s)	142, 481, 865
MmeI	TCCRAC	2 cut(s)	305, 388
MseI	TTAA	4 cut(s)	414, 735, 813, 927
MslI	CAYNNNNRTG	2 cut(s)	962, 1115
MspA1I	CMGCKG	3 cut(s)	316, 1141, 1196
MspI	CCGG	4 cut(s)	102, 142, 230, 1369
MspR9I	CCNGG	9 cut(s)	103, 179, 231, 302, 588, 690, 947, 1339, 1370
MvaI	CCWGG	6 cut(s)	179, 302, 588, 690, 947, 1339
MvnI	CGCG	3 cut(s)	1196, 1279, 1402
MwoI	GCNNNNNNNGC	3 cut(s)	127, 959, 1193
NciI	CCSGG	3 cut(s)	103, 231, 1370
NdeII	GATC	5 cut(s)	436, 580, 674, 1103, 1375
NlaIII	CATG	5 cut(s)	581, 595, 632, 767, 993
NlaIV	GGNNCC	5 cut(s)	6, 654, 952, 1130, 1336
NmuCI	GTSAC	1 cut(s)	1229
NruI	TCGCGA	1 cut(s)	1402
NsbI	TGCGCA	1 cut(s)	1178
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	171
PfoI	TCCNGGA	2 cut(s)	177, 688
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	100, 858, 1090
PleI	GAGTC	3 cut(s)	142, 481, 865
PpsI	GAGTC	3 cut(s)	142, 481, 865
PshAI	GACNNNNGTC	1 cut(s)	750
Psp6I	CCWGG	6 cut(s)	177, 300, 586, 688, 945, 1337
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	6 cut(s)	177, 300, 586, 688, 945, 1337
PspN4I	GGNNCC	5 cut(s)	6, 654, 952, 1130, 1336
PspPI	GGNCC	1 cut(s)	951
PstI	CTGCAG	1 cut(s)	1090
PvuII	CAGCTG	1 cut(s)	1141
RruI	TCGCGA	1 cut(s)	1402
RsaI	GTAC	3 cut(s)	228, 740, 1361
RsaNI	GTAC	3 cut(s)	227, 739, 1360
RseI	CAYNNNNRTG	2 cut(s)	962, 1115
SacII	CCGCGG	1 cut(s)	1197
SaqAI	TTAA	4 cut(s)	414, 735, 813, 927
SatI	GCNGC	3 cut(s)	99, 857, 1089
Sau3AI	GATC	5 cut(s)	436, 580, 674, 1103, 1375
Sau96I	GGNCC	1 cut(s)	951
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	3 cut(s)	142, 481, 865
ScrFI	CCNGG	9 cut(s)	103, 179, 231, 302, 588, 690, 947, 1339, 1370
SduI	GDGCHC	2 cut(s)	1221, 1326
SfaNI	GCATC	2 cut(s)	350, 376
SfcI	CTRYAG	1 cut(s)	1086
Sfr303I	CCGCGG	1 cut(s)	1197
SgrBI	CCGCGG	1 cut(s)	1197
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1115
Sse9I	AATT	5 cut(s)	214, 508, 679, 724, 932
SsiI	CCGC	8 cut(s)	206, 253, 314, 1008, 1194, 1196, 1279, 1316
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	2 cut(s)	1094, 1411
StyD4I	CCNGG	9 cut(s)	101, 177, 229, 300, 586, 688, 945, 1337, 1368
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	9 cut(s)	598, 790, 845, 884, 1123, 1155, 1312, 1364, 1393
TaqI	TCGA	2 cut(s)	439, 481
TasI	AATT	5 cut(s)	214, 508, 679, 724, 932
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	4 cut(s)	414, 735, 813, 927
Tru9I	TTAA	4 cut(s)	414, 735, 813, 927
TscAI	CASTG	4 cut(s)	262, 778, 889, 1317
TseFI	GTSAC	1 cut(s)	1229
TseI	GCWGC	3 cut(s)	98, 856, 1088
Tsp45I	GTSAC	1 cut(s)	1229
TspDTI	ATGAA	7 cut(s)	207, 358, 531, 566, 893, 946, 978
TspRI	CASTG	4 cut(s)	262, 778, 889, 1317
XapI	RAATTY	2 cut(s)	724, 932
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	2 cut(s)	1094, 1411
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.