Rmu_sc0002698.1_g000011

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002698.1
N/A
Physical Location & Seq
Reverse (-)
42924 .. 44200
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atgccttctgtcattactgctaagcctcgcgtcgacatcagagatgaagatatgagcgctgctgatacattaattatgacagaccctgatttcccaagccctagtgatccatacttgagagaacatctccattggttggtgacagacattcctggaatcactgatgtctcctttggaagagaagttgtggagtataaaactccgaaatcggtggtggggagtcaccgttatgtgttcctattgatgatggaaaccctaactcttggaagagtggtaggagaggttgtggacatgttcacgccaactgtgaaaatggatgtaatttacagttgcaacaaacaagtttctaatggccatgagatcatgccttctgtcattactgctaagtctcgcgtcgacatcggagatgaagatacaagtgctgctgatacattaattattacacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

4.74

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 23 - 85 2.3e-08 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 2 cut(s) 33, 396
AccII CGCG 2 cut(s) 30, 393
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 352
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 291
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 172, 393
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 59, 422
AseI ATTAAT 2 cut(s) 71, 434
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 151, 215
BalI TGGCCA 1 cut(s) 354
BbvI GCAGC 2 cut(s) 46, 409
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 172, 393
BfaI CTAG 2 cut(s) 102, 448
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 2 cut(s) 60, 423
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 2 cut(s) 61, 424
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 46, 409
Bsh1236I CGCG 2 cut(s) 30, 393
BshFI GGCC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 172, 393
BsnI GGCC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 106, 360
Bsp1720I GCTNAGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 354
BspFNI CGCG 2 cut(s) 30, 393
BspPI GGATC 1 cut(s) 101
BssMI GATC 2 cut(s) 106, 360
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 227, 307, 329
Bst6I CTCTTC 2 cut(s) 172, 262
BstDEI CTNAG 2 cut(s) 21, 384
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 2 cut(s) 30, 393
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 109, 363
BstMAI GTCTC 2 cut(s) 172, 393
BstMBI GATC 2 cut(s) 106, 360
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 2 cut(s) 30, 393
BstV1I GCAGC 2 cut(s) 46, 409
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 59
CseI GACGC 2 cut(s) 19, 382
CviAII CATG 3 cut(s) 292, 356, 364
CviJI RGCY 3 cut(s) 25, 99, 354
CviKI_1 RGCY 3 cut(s) 25, 99, 354
DdeI CTNAG 2 cut(s) 21, 384
DpnI GATC 2 cut(s) 108, 362
DpnII GATC 2 cut(s) 106, 360
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 172, 262
EarI CTCTTC 2 cut(s) 172, 262
Eco47III AGCGCT 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 295, 359, 367
FaiI YATR 8 cut(s) 53, 77, 112, 195, 231, 293, 357, 365
FatI CATG 3 cut(s) 291, 355, 363
FblI GTMKAC 2 cut(s) 33, 396
Fnu4HI GCNGC 2 cut(s) 60, 423
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 60, 423
FspBI CTAG 2 cut(s) 102, 448
GlaI GCGC 1 cut(s) 58
GluI GCNGC 2 cut(s) 60, 423
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 2 cut(s) 19, 382
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 295, 359, 367
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 2 cut(s) 34, 397
HindII GTYRAC 2 cut(s) 34, 397
HinfI GANTC 2 cut(s) 156, 220
HphI GGTGA 2 cut(s) 151, 215
Hpy166II GTNNAC 4 cut(s) 34, 289, 297, 397
Hpy188I TCNGA 3 cut(s) 41, 204, 404
Hpy8I GTNNAC 4 cut(s) 34, 289, 297, 397
Hpy99I CGWCG 2 cut(s) 35, 398
HpyAV CCTTC 2 cut(s) 15, 378
HpyCH4III ACNGT 3 cut(s) 227, 307, 329
HpyCH4V TGCA 1 cut(s) 333
HpyF3I CTNAG 2 cut(s) 21, 384
Hsp92II CATG 3 cut(s) 295, 359, 367
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 106, 360
LpnPI CCDG 3 cut(s) 99, 138, 165
Lsp1109I GCAGC 2 cut(s) 46, 409
MaeI CTAG 2 cut(s) 102, 448
MaeIII GTNAC 2 cut(s) 139, 221
MalI GATC 2 cut(s) 108, 362
MboI GATC 2 cut(s) 106, 360
MboII GAAGA 4 cut(s) 59, 189, 279, 422
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 3 cut(s) 72, 321, 435
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 2 cut(s) 36, 274
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 71, 434
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 30, 393
NdeII GATC 2 cut(s) 106, 360
NlaIII CATG 3 cut(s) 295, 359, 367
NmuCI GTSAC 2 cut(s) 139, 221
NspI RCATGY 1 cut(s) 295
PciI ACATGT 1 cut(s) 291
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 2 cut(s) 61, 424
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 291
PshBI ATTAAT 2 cut(s) 71, 434
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 228
SalI GTCGAC 2 cut(s) 32, 395
SaqAI TTAA 2 cut(s) 71, 434
SatI GCNGC 2 cut(s) 60, 423
Sau3AI GATC 2 cut(s) 106, 360
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 153
SetI ASST 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 3 cut(s) 72, 321, 435
SspMI CTAG 2 cut(s) 102, 448
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 227, 307, 329
TaqI TCGA 2 cut(s) 33, 396
TasI AATT 3 cut(s) 72, 321, 435
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 71, 434
Tru9I TTAA 2 cut(s) 71, 434
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 139, 221
TseI GCWGC 2 cut(s) 59, 422
Tsp45I GTSAC 2 cut(s) 139, 221
TspDTI ATGAA 2 cut(s) 60, 423
TspRI CASTG 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 136
VspI ATTAAT 2 cut(s) 71, 434
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 33, 396
XspI CTAG 2 cut(s) 102, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.