Rmu_sc0002699.1_g000031

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002699.1
N/A
Physical Location & Seq
Reverse (-)
139103 .. 139849
747 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
atgggaatggcgtttccatctccatctcctcgcgccttttgctctcatcctcgtcctcaaggcacgagcacgatgaccatgaaaccgaacccaaatctgaacctgaacccaatgttctccctccaccgcaagacggcgcgggccaaaacggcagtcaagattcaggaaatcgagcagagagcgacggcggatcaggctgcgaggatagtggtgttgatgttgagttgtgctgtgcagagctgctggcgagagagtgaaggattggatcgaagttgggagagaggccacaacgaacatcccagttttgggaagatggtgattgacatgtctagaacctggaagaaaatagatgaagagattgaagccaacgttatgcttgaggattaccggaataacaaggtttggatcctgtgcaatgactgcaatgacacaaccgaagtttacttccacattattgaccagaaatgcaaccactgcaaattatacaacacccacacaattgcccctccagttcttcctccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

174

Amino Acids

19.96

Weight (kDa)

8.18

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 107 - 164 2.1e-22 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 33, 139
AciI CCGC 3 cut(s) 127, 139, 188
AclI AACGTT 1 cut(s) 369
AclWI GGATC 4 cut(s) 198, 273, 400, 413
AfiI CCNNNNNNNGG 3 cut(s) 133, 305, 306
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 4 cut(s) 198, 273, 400, 413
AoxI GGCC 2 cut(s) 141, 283
ApeKI GCWGC 2 cut(s) 197, 240
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspLEI GCGC 2 cut(s) 35, 139
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 328
BamHI GGATCC 1 cut(s) 405
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 184, 227
BccI CCATC 3 cut(s) 25, 31, 307
BceAI ACGGC 3 cut(s) 150, 165, 201
BciT130I CCWGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 2 cut(s) 198, 241
BlsI GCNGC 2 cut(s) 199, 242
Bme1390I CCNGG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 42, 398
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 305, 306
Bse1I ACTGG 2 cut(s) 300, 509
Bse3DI GCAATG 2 cut(s) 421, 430
BseBI CCWGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 46, 295
BseLI CCNNNNNNNGG 3 cut(s) 133, 305, 306
BseMI GCAATG 2 cut(s) 421, 430
BseNI ACTGG 2 cut(s) 300, 509
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 184, 227
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 2 cut(s) 33, 139
BshFI GGCC 2 cut(s) 143, 285
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 388
BslI CCNNNNNNNGG 3 cut(s) 133, 305, 306
BsnI GGCC 2 cut(s) 143, 285
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 190, 265, 405
BspACI CCGC 3 cut(s) 127, 139, 188
BspANI GGCC 2 cut(s) 143, 285
BspFNI CGCG 2 cut(s) 33, 139
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 4 cut(s) 198, 273, 400, 413
BsrDI GCAATG 2 cut(s) 421, 430
BsrI ACTGG 2 cut(s) 300, 509
BssMI GATC 3 cut(s) 190, 265, 405
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 2 cut(s) 420, 474
BstC8I GCNNGC 2 cut(s) 141, 245
BstF5I GGATG 2 cut(s) 46, 295
BstFNI CGCG 2 cut(s) 33, 139
BstHHI GCGC 2 cut(s) 35, 139
BstKTI GATC 3 cut(s) 193, 268, 408
BstMBI GATC 3 cut(s) 190, 265, 405
BstMWI GCNNNNNNNGC 5 cut(s) 39, 149, 194, 420, 474
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 2 cut(s) 33, 139
BstV1I GCAGC 2 cut(s) 184, 227
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BsuRI GGCC 2 cut(s) 143, 285
BtsCI GGATG 2 cut(s) 46, 295
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 141, 245
CfoI GCGC 2 cut(s) 35, 139
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 3 cut(s) 79, 325, 522
CviJI RGCY 5 cut(s) 143, 197, 240, 285, 365
CviKI_1 RGCY 5 cut(s) 143, 197, 240, 285, 365
DpnI GATC 3 cut(s) 192, 267, 407
DpnII GATC 3 cut(s) 190, 265, 405
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 3 cut(s) 82, 328, 525
FaiI YATR 5 cut(s) 80, 326, 374, 484, 523
FatI CATG 3 cut(s) 78, 324, 521
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 198, 241
FokI GGATG 2 cut(s) 33, 282
Fsp4HI GCNGC 2 cut(s) 198, 241
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 34, 138
GluI GCNGC 2 cut(s) 198, 241
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 143, 285
HapII CCGG 1 cut(s) 388
HhaI GCGC 2 cut(s) 35, 139
Hin1II CATG 3 cut(s) 82, 328, 525
Hin6I GCGC 2 cut(s) 33, 137
HinP1I GCGC 2 cut(s) 33, 137
HinfI GANTC 1 cut(s) 160
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 3 cut(s) 157, 164, 330
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 235, 414, 423, 468, 477
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 149, 194, 420, 474
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 3 cut(s) 82, 328, 525
HspAI GCGC 2 cut(s) 33, 137
Kzo9I GATC 3 cut(s) 190, 265, 405
Lsp1109I GCAGC 2 cut(s) 184, 227
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 369
MalI GATC 3 cut(s) 192, 267, 407
MboI GATC 3 cut(s) 190, 265, 405
MboII GAAGA 4 cut(s) 322, 352, 365, 506
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 479, 498
MnlI CCTC 8 cut(s) 39, 60, 66, 131, 195, 275, 373, 516
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 337
MvnI CGCG 2 cut(s) 33, 139
MwoI GCNNNNNNNGC 5 cut(s) 39, 149, 194, 420, 474
NdeII GATC 3 cut(s) 190, 265, 405
NlaIII CATG 3 cut(s) 82, 328, 525
NlaIV GGNNCC 1 cut(s) 407
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 2 cut(s) 199, 242
PscI ACATGT 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 405
SatI GCNGC 2 cut(s) 198, 241
Sau3AI GATC 3 cut(s) 190, 265, 405
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 1 cut(s) 71
SetI ASST 5 cut(s) 105, 242, 338, 372, 402
SmlI CTYRAG 2 cut(s) 57, 377
SmoI CTYRAG 2 cut(s) 57, 377
Sse9I AATT 2 cut(s) 479, 498
SsiI CCGC 3 cut(s) 127, 139, 188
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 171, 268
TasI AATT 2 cut(s) 479, 498
TfiI GAWTC 1 cut(s) 160
TscAI CASTG 1 cut(s) 479
TseI GCWGC 2 cut(s) 197, 240
TspDTI ATGAA 2 cut(s) 95, 366
TspRI CASTG 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 328
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.