Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002700.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15107 .. 20452

Gene Structure 5346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgtggcaagaattgacttgcggaaattatctgaactcccatgatcgtagtcatcagggggaggtgcagacatcagggggagatgtctacatgttcgtctcgaatcgtgaagggtgtgttgtgctctttttccccttcgaccgagattccttctttcatacgaccacaaacctctcctccagccctaagccgccatcaacgaagaatagaaagagactaagccgccatgagaggagtacagaaaagactaagggcgatgagagaagtacagagagacaaaaggcgataggagaagtacagagagatcaatatattgggatcgcttctaccagcgatctggatcgcaaatgtattgcgttctgggtcgtgcgatctggatcgcggttcagaaacaaattaattgagtcactagttcatggttcatgggaggccatgttcaatgctattgacgaggtcagaacaaatattccgagcataagaggaacgaccgcactggaggagaggaacgaccggactggagaaaagaggaacgaccgaactggagaagaggaacgaccggactggagaagaggaacgattccgagcataagaggaacaaccgaactagagaagaggaacgaccggactggagaagaggaacgaccgaactggagaagaggaatgaccggaactgggttgcgcccgagcaggaagagaaacgatcgagggtctcgagcagaagaaaaacgatcgagggtctcgtttccggactggagaacgaccagaactgggtctcgtccagaagtgggtctcgtcattgtcgcgtctctggttatcaagggaattatggatggttgccaacaatctgactgtgctcttttaggtggagagactgctgagatgccgggtttctatgcagagggtgagtatgacctctgtggttttgtggttggaattgtgaagaaggaatcagtgattgatgggaaaaacattttggctggagatgtcctcattggcccaccgtctagtggggttcattccaatggttttctcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

345

Amino Acids

38.85

Weight (kDa)

8.87

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	382, 803
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	5 cut(s)	21, 191, 223, 382, 489
AclWI	GGATC	3 cut(s)	326, 348, 385
AfaI	GTAC	3 cut(s)	238, 268, 297
AfiI	CCNNNNNNNGG	4 cut(s)	672, 768, 785, 1007
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	439
AhlI	ACTAGT	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AloI	GAACNNNNNNTCC	4 cut(s)	419, 451, 451, 483
Alw21I	GWGCWC	2 cut(s)	126, 856
Alw26I	GTCTC	9 cut(s)	103, 208, 268, 714, 742, 777, 794, 810, 863
AlwI	GGATC	3 cut(s)	326, 348, 385
Ama87I	CYCGRG	2 cut(s)	682, 711
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	2 cut(s)	429, 994
AseI	ATTAAT	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	995
AsuC2I	CCSGG	1 cut(s)	885
AsuHPI	GGTGA	1 cut(s)	914
AvaI	CYCGRG	2 cut(s)	682, 711
Bbv12I	GWGCWC	2 cut(s)	126, 856
BccI	CCATC	3 cut(s)	202, 824, 953
BcnI	CCSGG	1 cut(s)	885
BcoDI	GTCTC	9 cut(s)	103, 208, 268, 714, 742, 777, 794, 810, 863
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	3 cut(s)	410, 605, 1005
BisI	GCNGC	2 cut(s)	191, 223
BlsI	GCNGC	2 cut(s)	192, 224
Bme1390I	CCNGG	1 cut(s)	885
BmeT110I	CYCGRG	2 cut(s)	682, 711
BmgT120I	GGNCC	1 cut(s)	995
BmrFI	CCNGG	1 cut(s)	885
BmrI	ACTGGG	2 cut(s)	681, 777
BmsI	GCATC	1 cut(s)	870
BmuI	ACTGGG	2 cut(s)	681, 777
BplI	GAGNNNNNCTC	2 cut(s)	972, 1004
BpmI	CTGGAG	9 cut(s)	163, 515, 537, 561, 583, 648, 670, 772, 999
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	885
BsaBI	GATNNNNATC	2 cut(s)	339, 376
BsaI	GGTCTC	4 cut(s)	714, 742, 777, 794
BsaWI	WCCGGW	5 cut(s)	510, 556, 621, 665, 745
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 419, 449
Bsc4I	CCNNNNNNNGG	4 cut(s)	672, 768, 785, 1007
Bse1I	ACTGG	9 cut(s)	498, 520, 544, 566, 631, 653, 676, 755, 772
Bse8I	GATNNNNATC	2 cut(s)	339, 376
BseAI	TCCGGA	1 cut(s)	745
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	2 cut(s)	339, 376
BseLI	CCNNNNNNNGG	4 cut(s)	672, 768, 785, 1007
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	9 cut(s)	498, 520, 544, 566, 631, 653, 676, 755, 772
BseRI	GAGGAG	3 cut(s)	166, 247, 512
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	2 cut(s)	382, 803
Bsh1285I	CGRYCG	9 cut(s)	142, 489, 511, 535, 557, 622, 644, 703, 731
BshFI	GGCC	2 cut(s)	431, 996
BsiEI	CGRYCG	9 cut(s)	142, 489, 511, 535, 557, 622, 644, 703, 731
BsiHKAI	GWGCWC	2 cut(s)	126, 856
BsiHKCI	CYCGRG	2 cut(s)	682, 711
BsiSI	CCGG	6 cut(s)	511, 557, 622, 666, 746, 884
BslI	CCNNNNNNNGG	4 cut(s)	672, 768, 785, 1007
BsmAI	GTCTC	9 cut(s)	103, 208, 268, 714, 742, 777, 794, 810, 863
BsmBI	CGTCTC	2 cut(s)	103, 810
BsnI	GGCC	2 cut(s)	431, 996
Bso31I	GGTCTC	4 cut(s)	714, 742, 777, 794
BsoBI	CYCGRG	2 cut(s)	682, 711
Bsp1286I	GDGCHC	2 cut(s)	126, 856
Bsp13I	TCCGGA	1 cut(s)	745
Bsp143I	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
BspACI	CCGC	5 cut(s)	21, 191, 223, 382, 489
BspANI	GGCC	2 cut(s)	431, 996
BspCNI	CTCAG	1 cut(s)	868
BspEI	TCCGGA	1 cut(s)	745
BspFNI	CGCG	2 cut(s)	382, 803
BspPI	GGATC	3 cut(s)	326, 348, 385
BspTNI	GGTCTC	4 cut(s)	714, 742, 777, 794
BsrI	ACTGG	9 cut(s)	498, 520, 544, 566, 631, 653, 676, 755, 772
BssMI	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
Bst4CI	ACNGT	2 cut(s)	851, 1002
Bst6I	CTCTTC	6 cut(s)	540, 562, 605, 627, 649, 686
BstDEI	CTNAG	4 cut(s)	186, 218, 249, 876
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	2 cut(s)	382, 803
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	9 cut(s)	46, 307, 321, 337, 343, 374, 380, 703, 731
BstMAI	GTCTC	9 cut(s)	103, 208, 268, 714, 742, 777, 794, 810, 863
BstMBI	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
BstMCI	CGRYCG	9 cut(s)	142, 489, 511, 535, 557, 622, 644, 703, 731
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	883
BstUI	CGCG	2 cut(s)	382, 803
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	431, 996
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	835
BtsIMutI	CAGTG	2 cut(s)	491, 957
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	1 cut(s)	792
Csp6I	GTAC	3 cut(s)	237, 267, 296
CviAII	CATG	6 cut(s)	41, 91, 227, 416, 423, 433
CviJI	RGCY	6 cut(s)	183, 190, 222, 431, 977, 996
CviKI_1	RGCY	6 cut(s)	183, 190, 222, 431, 977, 996
CviQI	GTAC	3 cut(s)	237, 267, 296
DdeI	CTNAG	4 cut(s)	186, 218, 249, 876
DpnI	GATC	9 cut(s)	45, 306, 320, 336, 342, 373, 379, 702, 730
DpnII	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
Eam1104I	CTCTTC	6 cut(s)	540, 562, 605, 627, 649, 686
EarI	CTCTTC	6 cut(s)	540, 562, 605, 627, 649, 686
Eco31I	GGTCTC	4 cut(s)	714, 742, 777, 794
Eco88I	CYCGRG	2 cut(s)	682, 711
Esp3I	CGTCTC	2 cut(s)	103, 810
FaeI	CATG	6 cut(s)	44, 94, 230, 419, 426, 436
FatI	CATG	6 cut(s)	40, 90, 226, 415, 422, 432
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	191, 223
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	191, 223
FspBI	CTAG	3 cut(s)	410, 605, 1005
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	2 cut(s)	191, 223
GsuI	CTGGAG	9 cut(s)	163, 515, 537, 561, 583, 648, 670, 772, 999
HaeIII	GGCC	2 cut(s)	431, 996
HapII	CCGG	6 cut(s)	511, 557, 622, 666, 746, 884
HgaI	GACGC	1 cut(s)	792
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	6 cut(s)	44, 94, 230, 419, 426, 436
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	103, 146, 404, 577, 947
HpaII	CCGG	6 cut(s)	511, 557, 622, 666, 746, 884
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	6 cut(s)	33, 389, 458, 471, 582, 847
Hpy188III	TCNNGA	7 cut(s)	100, 107, 338, 375, 711, 746, 779
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	104, 145, 160, 937
HpyCH4III	ACNGT	2 cut(s)	851, 1002
HpyCH4V	TGCA	2 cut(s)	67, 896
HpyF3I	CTNAG	4 cut(s)	186, 218, 249, 876
Hsp92II	CATG	6 cut(s)	44, 94, 230, 419, 426, 436
HspAI	GCGC	1 cut(s)	679
Kpn2I	TCCGGA	1 cut(s)	745
Kzo9I	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	3 cut(s)	410, 605, 1005
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	9 cut(s)	45, 306, 320, 336, 342, 373, 379, 702, 730
MboI	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
MboII	GAAGA	9 cut(s)	214, 557, 579, 622, 644, 666, 703, 731, 952
MhlI	GDGCHC	2 cut(s)	126, 856
MluCI	AATT	6 cut(s)	11, 25, 395, 399, 822, 933
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	910
MroI	TCCGGA	1 cut(s)	745
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	1020
MspI	CCGG	6 cut(s)	511, 557, 622, 666, 746, 884
MspR9I	CCNGG	1 cut(s)	885
MvnI	CGCG	2 cut(s)	382, 803
NciI	CCSGG	1 cut(s)	885
NdeII	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
NlaIII	CATG	6 cut(s)	44, 94, 230, 419, 426, 436
NmuCI	GTSAC	1 cut(s)	405
NspI	RCATGY	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	711
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	709, 737
PfeI	GAWTC	4 cut(s)	103, 146, 577, 947
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	192, 224
Ple19I	CGATCG	2 cut(s)	703, 731
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	90
PshBI	ATTAAT	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	995
PsyI	GACNNNGTC	1 cut(s)	452
PvuI	CGATCG	2 cut(s)	703, 731
RsaI	GTAC	3 cut(s)	238, 268, 297
RsaNI	GTAC	3 cut(s)	237, 267, 296
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	2 cut(s)	191, 223
Sau3AI	GATC	9 cut(s)	43, 304, 318, 334, 340, 371, 377, 700, 728
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	885
SduI	GDGCHC	2 cut(s)	126, 856
SetI	ASST	5 cut(s)	66, 174, 456, 865, 915
SfaNI	GCATC	1 cut(s)	870
Sfr274I	CTCGAG	1 cut(s)	711
SlaI	CTCGAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	6 cut(s)	11, 25, 395, 399, 822, 933
SsiI	CCGC	5 cut(s)	21, 191, 223, 382, 489
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	3 cut(s)	410, 605, 1005
StyD4I	CCNGG	1 cut(s)	883
TaaI	ACNGT	2 cut(s)	851, 1002
TaqI	TCGA	5 cut(s)	101, 138, 703, 712, 731
TaqII	GACCGA	3 cut(s)	156, 549, 658
TasI	AATT	6 cut(s)	11, 25, 395, 399, 822, 933
TatI	WGTACW	3 cut(s)	236, 266, 295
TauI	GCSGC	2 cut(s)	193, 225
TfiI	GAWTC	4 cut(s)	103, 146, 577, 947
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	2 cut(s)	498, 957
TseFI	GTSAC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	4 cut(s)	146, 404, 411, 1004
TspRI	CASTG	2 cut(s)	498, 957
Tth111I	GACNNNGTC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	398
XceI	RCATGY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	3 cut(s)	410, 605, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.