Rmu_sc0002705.1_g000028

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002705.1
N/A
Physical Location & Seq
Reverse (-)
118286 .. 121376
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgggtaaacatcaagttagatggaggactgataagggatcgctcaacctaacgatctgggtcgcggatgcaccgcaattgggtatgtcgtttccggaacgcgaagctcttacacgcgccggcgccgaaaaaaccacaaccgtcgccgtcactgttttactcaaccacgtccaaagatccctcctccaaaacgcacagcatcggctttcctccaaattcaaactaatcaccaccaatttcatggccgacggcggcggcgttcataagcgagctcttaccagtgtcgccgacctcgacggcgtccttgatgggatactggcatggctaccggtcaaatctttgatgcgatatcgcttcgtctgcaagtcatggcgtgctctgatttaccattcttgtcttgttttgtcatctattttccacttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

141

Amino Acids

15.82

Weight (kDa)

10.17

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 104 - 131 3.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 3 cut(s) 65, 102, 117
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 4 cut(s) 65, 74, 252, 255
AclWI GGATC 2 cut(s) 46, 171
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 2 cut(s) 123, 300
AfiI CCNNNNNNNGG 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 220
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 2 cut(s) 107, 272
AluI AGCT 2 cut(s) 107, 272
Alw21I GWGCWC 2 cut(s) 274, 379
AlwI GGATC 2 cut(s) 46, 171
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 215
AsiGI ACCGGT 1 cut(s) 328
AspLEI GCGC 2 cut(s) 119, 125
AsuHPI GGTGA 1 cut(s) 220
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 274, 379
BccI CCATC 2 cut(s) 15, 302
BceAI ACGGC 3 cut(s) 131, 265, 313
BciVI GTATCC 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 2 cut(s) 253, 256
BlsI GCNGC 2 cut(s) 254, 257
BmgBI CACGTC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 3 cut(s) 58, 208, 333
BsaHI GRCGYC 2 cut(s) 123, 300
BsaWI WCCGGW 2 cut(s) 94, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 2 cut(s) 119, 328
Bse1I ACTGG 2 cut(s) 279, 321
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 279, 321
BseRI GAGGAG 1 cut(s) 173
Bsh1236I CGCG 3 cut(s) 65, 102, 117
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 122
BshTI ACCGGT 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 274, 379
BsiSI CCGG 3 cut(s) 95, 120, 329
BslI CCNNNNNNNGG 1 cut(s) 80
BsnI GGCC 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 274, 379
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 38, 54, 176
BspACI CCGC 4 cut(s) 65, 74, 252, 255
BspANI GGCC 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 94
BspFNI CGCG 3 cut(s) 65, 102, 117
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 2 cut(s) 46, 171
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 119, 328
BsrI ACTGG 2 cut(s) 279, 321
BssAI RCCGGY 2 cut(s) 119, 328
BssMI GATC 3 cut(s) 38, 54, 176
BssNI GRCGYC 2 cut(s) 123, 300
Bst4CI ACNGT 2 cut(s) 142, 154
BstACI GRCGYC 2 cut(s) 123, 300
BstC8I GCNNGC 3 cut(s) 121, 270, 375
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 3 cut(s) 65, 102, 117
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 119, 125
BstKTI GATC 3 cut(s) 41, 57, 179
BstMBI GATC 3 cut(s) 38, 54, 176
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstUI CGCG 3 cut(s) 65, 102, 117
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 245
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 150, 286
Cac8I GCNNGC 3 cut(s) 121, 270, 375
CfoI GCGC 2 cut(s) 119, 125
Cfr10I RCCGGY 2 cut(s) 119, 328
CseI GACGC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 3 cut(s) 241, 321, 369
CviJI RGCY 5 cut(s) 107, 205, 245, 272, 325
CviKI_1 RGCY 5 cut(s) 107, 205, 245, 272, 325
DinI GGCGCC 1 cut(s) 124
DpnI GATC 3 cut(s) 40, 56, 178
DpnII GATC 3 cut(s) 38, 54, 176
EaeI YGGCCR 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 272
EcoRV GATATC 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 274
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaeI CATG 3 cut(s) 244, 324, 372
FaiI YATR 5 cut(s) 86, 242, 264, 322, 370
FatI CATG 3 cut(s) 240, 320, 368
Fnu4HI GCNGC 2 cut(s) 253, 256
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 2 cut(s) 253, 256
GlaI GCGC 2 cut(s) 118, 124
GluI GCNGC 2 cut(s) 253, 256
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 245
HapII CCGG 3 cut(s) 95, 120, 329
HgaI GACGC 1 cut(s) 289
HhaI GCGC 2 cut(s) 119, 125
Hin1I GRCGYC 2 cut(s) 123, 300
Hin1II CATG 3 cut(s) 244, 324, 372
Hin6I GCGC 2 cut(s) 117, 123
HinP1I GCGC 2 cut(s) 117, 123
HpaII CCGG 3 cut(s) 95, 120, 329
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 381, 425
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 3 cut(s) 146, 251, 299
HpyCH4III ACNGT 2 cut(s) 142, 154
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 71, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 2 cut(s) 123, 300
Hsp92II CATG 3 cut(s) 244, 324, 372
HspAI GCGC 2 cut(s) 117, 123
KasI GGCGCC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 94
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 38, 54, 176
LpnPI CCDG 6 cut(s) 43, 108, 133, 292, 302, 342
LweI GCATC 3 cut(s) 58, 208, 333
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 40, 56, 178
MboI GATC 3 cut(s) 38, 54, 176
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 274, 379
MluCI AATT 3 cut(s) 77, 215, 235
Mly113I GGCGCC 1 cut(s) 123
MnlI CCTC 5 cut(s) 18, 191, 194, 220, 302
MreI CGCCGGCG 1 cut(s) 119
MroI TCCGGA 1 cut(s) 94
MroNI GCCGGC 1 cut(s) 119
MspI CCGG 3 cut(s) 95, 120, 329
MunI CAATTG 1 cut(s) 77
MvnI CGCG 3 cut(s) 65, 102, 117
MwoI GCNNNNNNNGC 1 cut(s) 360
NaeI GCCGGC 1 cut(s) 121
NarI GGCGCC 1 cut(s) 123
NdeII GATC 3 cut(s) 38, 54, 176
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 244, 324, 372
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 291
PdiI GCCGGC 1 cut(s) 121
PflFI GACNNNGTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 2 cut(s) 254, 257
PluTI GGCGCC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 299
SacI GAGCTC 1 cut(s) 274
SatI GCNGC 2 cut(s) 253, 256
Sau3AI GATC 3 cut(s) 38, 54, 176
SduI GDGCHC 2 cut(s) 274, 379
SetI ASST 5 cut(s) 51, 109, 171, 274, 294
SfaNI GCATC 3 cut(s) 58, 208, 333
SfoI GGCGCC 1 cut(s) 124
SgrAI CRCCGGYG 1 cut(s) 119
Sse9I AATT 3 cut(s) 77, 215, 235
SsiI CCGC 4 cut(s) 65, 74, 252, 255
SspDI GGCGCC 1 cut(s) 122
SstI GAGCTC 1 cut(s) 274
TaaI ACNGT 2 cut(s) 142, 154
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 294
TasI AATT 3 cut(s) 77, 215, 235
TauI GCSGC 2 cut(s) 255, 258
TscAI CASTG 2 cut(s) 157, 286
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 229, 251
TspRI CASTG 2 cut(s) 157, 286
Tth111I GACNNNGTC 1 cut(s) 299
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.