Rmu_sc0002709.1_g000004

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
N/A
Physical Location & Seq
Forward (+)
18207 .. 20299
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
atggaaagcagaaaggtgaatagcaggagcaacttccagatgccccttcactaccctaggtacaccagaaaggactaccaggacatgcccgagtggaagctcgaccgccttcttgccaattatgggttgccggctcacggtgacttggcttccaagagagactttgcaatgggtgcctttctctggcctgatcattgtcgccatggtcccaatccaagccattcacctacgcgcccctgcgcacgtatccctgctgcccctgcatcaccgctgcacgtctgctgcccctgcagcaccaacgcacaccaactgcatccttctcctttcctatgcacgtctgtctgcttgcaagccccaaaacatctagtttggaacctcagatcaaaatcttttcttcatcaaagttgttcgtctctgtctcttccatctgactccgaatttcagccttatcggagttgttttgagacttgtacaccaatagaagtgatgtcagacttgaacaagcttgattttactccattagattctacgggcacagatactttcctgtgggctcatgttattgagttccacctaattgcccttgatttattgcctacaatccaggagtcttgttctaaaagaaccactcaaggccctcaaactgagatagataattccagggcatttaccttgatgaagcgccacatgaagatggccctccagtttgagtacatgaatgaggataacacttacaacctttgggttgtgcctcgtgaacgttttagtaacactcacaattttcagaacttagaagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.58

Weight (kDa)

7.21

Isoelectric Point (pI)

66.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 4.2e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 106, 269
AclI AACGTT 1 cut(s) 760
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 3 cut(s) 62, 472, 713
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 183
AgsI TTSAA 1 cut(s) 499
AjiI CACGTC 2 cut(s) 277, 336
AjnI CCWGG 3 cut(s) 78, 603, 659
AluBI AGCT 2 cut(s) 100, 505
AluI AGCT 2 cut(s) 100, 505
Alw26I GTCTC 4 cut(s) 153, 417, 423, 458
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 3 cut(s) 185, 634, 696
ApeKI GCWGC 4 cut(s) 254, 271, 282, 291
ApoI RAATTY 1 cut(s) 437
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 3 cut(s) 234, 242, 684
AspS9I GGNCC 3 cut(s) 206, 635, 697
AsuHPI GGTGA 4 cut(s) 28, 152, 216, 258
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 206
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 556
BauI CACGAG 1 cut(s) 753
BbvI GCAGC 4 cut(s) 241, 258, 269, 303
BccI CCATC 2 cut(s) 433, 688
BciT130I CCWGG 3 cut(s) 80, 605, 661
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 4 cut(s) 153, 417, 423, 458
BfaI CTAG 2 cut(s) 57, 365
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 685
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 4 cut(s) 255, 272, 283, 292
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 4 cut(s) 256, 273, 284, 293
Bme1390I CCNGG 3 cut(s) 80, 605, 661
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 2 cut(s) 277, 336
BmgT120I GGNCC 3 cut(s) 206, 635, 697
BmiI GGNNCC 3 cut(s) 175, 208, 374
BmrFI CCNGG 3 cut(s) 80, 605, 661
BmsI GCATC 3 cut(s) 30, 272, 322
BpmI CTGGAG 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 56, 202, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 183
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 385
BseBI CCWGG 3 cut(s) 80, 605, 661
BseDI CCNNGG 3 cut(s) 56, 202, 660
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 391, 636
BseNI ACTGG 1 cut(s) 703
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 4 cut(s) 241, 258, 269, 303
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 187, 636, 698
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BsmAI GTCTC 4 cut(s) 153, 417, 423, 458
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 3 cut(s) 187, 636, 698
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 536, 556
Bsp1407I TGTACA 1 cut(s) 470
Bsp143I GATC 2 cut(s) 190, 380
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 2 cut(s) 106, 269
BspANI GGCC 3 cut(s) 187, 636, 698
BspCNI CTCAG 2 cut(s) 390, 637
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 175, 208, 374
BspMAI CTGCAG 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 470
BsrI ACTGG 1 cut(s) 703
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 56, 202, 660
BssMI GATC 2 cut(s) 190, 380
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 2 cut(s) 56, 202
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 3 cut(s) 80, 605, 661
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 132, 347, 351
BstDEI CTNAG 3 cut(s) 377, 645, 790
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 3 cut(s) 234, 242, 684
BstKTI GATC 2 cut(s) 193, 383
BstMAI GTCTC 4 cut(s) 153, 417, 423, 458
BstMBI GATC 2 cut(s) 190, 380
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 173, 260, 288, 291
BstNI CCWGG 3 cut(s) 80, 605, 661
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 78, 603, 659
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 4 cut(s) 241, 258, 269, 303
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 3 cut(s) 187, 636, 698
BtgI CCRYGG 1 cut(s) 202
BtrI CACGTC 2 cut(s) 277, 336
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 132, 347, 351
CfoI GCGC 3 cut(s) 234, 242, 684
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 206, 635, 697
Csp6I GTAC 3 cut(s) 61, 471, 712
CviAII CATG 6 cut(s) 85, 203, 557, 688, 715, 798
CviQI GTAC 3 cut(s) 61, 471, 712
DdeI CTNAG 3 cut(s) 377, 645, 790
DpnI GATC 2 cut(s) 192, 382
DpnII GATC 2 cut(s) 190, 380
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 56, 202
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 78, 603, 659
EcoT14I CCWWGG 2 cut(s) 56, 202
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 2 cut(s) 56, 202
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 6 cut(s) 88, 206, 560, 691, 718, 801
FaiI YATR 8 cut(s) 86, 123, 204, 331, 558, 689, 716, 799
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 192
FatI CATG 6 cut(s) 84, 202, 556, 687, 714, 797
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 255, 272, 283, 292
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 4 cut(s) 255, 272, 283, 292
FspBI CTAG 2 cut(s) 57, 365
FspI TGCGCA 1 cut(s) 241
GlaI GCGC 3 cut(s) 233, 241, 683
GluI GCNGC 4 cut(s) 255, 272, 283, 292
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 3 cut(s) 187, 636, 698
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 234, 242, 684
Hin1II CATG 6 cut(s) 88, 206, 560, 691, 718, 801
Hin6I GCGC 3 cut(s) 232, 240, 682
HinP1I GCGC 3 cut(s) 232, 240, 682
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 431, 524, 608
HpaII CCGG 1 cut(s) 131
HphI GGTGA 4 cut(s) 28, 152, 216, 258
Hpy166II GTNNAC 3 cut(s) 63, 473, 758
Hpy188I TCNGA 6 cut(s) 380, 430, 436, 453, 493, 786
Hpy188III TCNNGA 2 cut(s) 37, 755
Hpy8I GTNNAC 3 cut(s) 63, 473, 758
HpyAV CCTTC 3 cut(s) 56, 119, 327
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 4 cut(s) 244, 276, 335, 760
HpyCH4V TGCA 7 cut(s) 167, 263, 274, 291, 313, 333, 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 260, 288, 291
HpyF3I CTNAG 3 cut(s) 377, 645, 790
HpySE526I ACGT 4 cut(s) 244, 276, 335, 760
Hsp92II CATG 6 cut(s) 88, 206, 560, 691, 718, 801
HspAI GCGC 3 cut(s) 232, 240, 682
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 380
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 4 cut(s) 241, 258, 269, 303
LweI GCATC 3 cut(s) 30, 272, 322
MaeI CTAG 2 cut(s) 57, 365
MaeII ACGT 4 cut(s) 244, 276, 335, 760
MaeIII GTNAC 2 cut(s) 140, 767
MalI GATC 2 cut(s) 192, 382
MboI GATC 2 cut(s) 190, 380
MboII GAAGA 3 cut(s) 386, 413, 703
MhlI GDGCHC 2 cut(s) 536, 556
MluCI AATT 5 cut(s) 118, 437, 576, 655, 778
MlyI GAGTC 2 cut(s) 425, 617
MnlI CCTC 5 cut(s) 386, 648, 710, 715, 762
MroNI GCCGGC 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 3 cut(s) 80, 605, 661
MvaI CCWGG 3 cut(s) 80, 605, 661
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 173, 260, 288, 291
NaeI GCCGGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 190, 380
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 6 cut(s) 88, 206, 560, 691, 718, 801
NlaIV GGNNCC 3 cut(s) 175, 208, 374
NmuCI GTSAC 1 cut(s) 140
NsbI TGCGCA 1 cut(s) 241
NspI RCATGY 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 4 cut(s) 256, 273, 284, 293
PleI GAGTC 2 cut(s) 425, 616
PpsI GAGTC 2 cut(s) 425, 616
Ppu21I YACGTR 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 760
Psp6I CCWGG 3 cut(s) 78, 603, 659
PspGI CCWGG 3 cut(s) 78, 603, 659
PspN4I GGNNCC 3 cut(s) 175, 208, 374
PspPI GGNCC 3 cut(s) 206, 635, 697
PstI CTGCAG 1 cut(s) 293
RsaI GTAC 3 cut(s) 62, 472, 713
RsaNI GTAC 3 cut(s) 61, 471, 712
RseI CAYNNNNRTG 1 cut(s) 692
SatI GCNGC 4 cut(s) 255, 272, 283, 292
Sau3AI GATC 2 cut(s) 190, 380
Sau96I GGNCC 3 cut(s) 206, 635, 697
SchI GAGTC 2 cut(s) 425, 617
ScrFI CCNGG 3 cut(s) 80, 605, 661
SduI GDGCHC 2 cut(s) 536, 556
SfaNI GCATC 3 cut(s) 30, 272, 322
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 5 cut(s) 118, 437, 576, 655, 778
SsiI CCGC 2 cut(s) 106, 269
SspMI CTAG 2 cut(s) 57, 365
StyD4I CCNGG 3 cut(s) 78, 603, 659
StyI CCWWGG 2 cut(s) 56, 202
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 4 cut(s) 247, 279, 338, 763
TaqI TCGA 1 cut(s) 102
TasI AATT 5 cut(s) 118, 437, 576, 655, 778
TatI WGTACW 2 cut(s) 470, 711
TfiI GAWTC 1 cut(s) 524
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 4 cut(s) 254, 271, 282, 291
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 386, 692, 704, 731
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 2 cut(s) 57, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.