Rmu_sc0002715.1_g000029

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002715.1
OG0031223
Physical Location & Seq
Reverse (-)
98394 .. 98957
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
atgagtcctactgatagccgatcatgctgtatcagacacctgctgacctgccaagtagtctgtttgcctcttgcacacaagggtgcaaaccaatatgactttgctctcaataaagtcactgctgagtgtaaagtggtatgttactatcacaatggtaattgtgaaacagggtttcaagtcataactgttggagatgagcagtggaggccaatgaaacatccaaaccaagagttgttagaacaaggcatactttttgccgatcatggagcgtatattggagcaaacagtgggattggacatttttcttacttgattgaagatggagaaggttaccgactagaagtgcacactttggagaagtggaaggaatgcttcataagtacttgccgtgtgccacaagaagctttcgaaaacttgtctgaagttttgttttgccaatgggataggcatgttactgttgcgaagattggagatgaagatattagtgttttgaggttggaggattacatggagaataggtggaaacaaaaatttatatatttacagcaaattctaaagttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

187

Amino Acids

21.61

Weight (kDa)

5.59

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031223)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002715.1_g000029
rosa_samantha Rh5BG280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 48
Acc36I ACCTGC 2 cut(s) 48, 56
AcsI RAATTY 2 cut(s) 530, 549
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 382
AgsI TTSAA 2 cut(s) 176, 317
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw21I GWGCWC 1 cut(s) 348
Alw44I GTGCAC 1 cut(s) 344
AoxI GGCC 1 cut(s) 206
ApaLI GTGCAC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 530, 549
AsuII TTCGAA 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 372
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 48, 56
BmcAI AGTACT 1 cut(s) 382
Bpu14I TTCGAA 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 348
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 20, 259
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 115
BspMI ACCTGC 2 cut(s) 48, 56
BspT104I TTCGAA 1 cut(s) 408
BssMI GATC 2 cut(s) 20, 259
Bst4CI ACNGT 3 cut(s) 187, 287, 457
BstBI TTCGAA 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 23, 262
BstMBI GATC 2 cut(s) 20, 259
BstMWI GCNNNNNNNGC 2 cut(s) 24, 205
BstNSI RCATGY 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 2 cut(s) 117, 206
BtsIMutI CAGTG 3 cut(s) 117, 206, 292
BveI ACCTGC 2 cut(s) 48, 56
Csp6I GTAC 1 cut(s) 381
CviAII CATG 4 cut(s) 24, 263, 449, 508
CviJI RGCY 3 cut(s) 18, 208, 404
CviKI_1 RGCY 3 cut(s) 18, 208, 404
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 22, 261
DpnII GATC 2 cut(s) 20, 259
Eco57I CTGAAG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 329
FaeI CATG 4 cut(s) 27, 266, 452, 511
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 356, 388
FatI CATG 4 cut(s) 23, 262, 448, 507
FokI GGATG 1 cut(s) 204
FspBI CTAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 4 cut(s) 27, 266, 452, 511
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 35, 421
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 320, 358
HpyCH4III ACNGT 3 cut(s) 187, 287, 457
HpyCH4V TGCA 3 cut(s) 74, 86, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 205
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 4 cut(s) 27, 266, 452, 511
Kzo9I GATC 2 cut(s) 20, 259
LmnI GCTCC 2 cut(s) 266, 278
LpnPI CCDG 3 cut(s) 53, 61, 153
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 4 cut(s) 115, 140, 329, 451
MalI GATC 2 cut(s) 22, 261
MboI GATC 2 cut(s) 20, 259
MboII GAAGA 3 cut(s) 329, 475, 488
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 157, 530, 549
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 169, 477
MnlI CCTC 4 cut(s) 78, 198, 486, 493
MslI CAYNNNNRTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 24, 205
NdeII GATC 2 cut(s) 20, 259
NlaIII CATG 4 cut(s) 27, 266, 452, 511
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 452
NspV TTCGAA 1 cut(s) 408
OliI CACNNNNGTG 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 48
PctI GAATGC 1 cut(s) 374
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 81
Sau3AI GATC 2 cut(s) 20, 259
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 42, 50, 331, 406, 497, 521
SfuI TTCGAA 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 3 cut(s) 157, 530, 549
SspMI CTAG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 187, 287, 457
TaqI TCGA 1 cut(s) 408
TasI AATT 3 cut(s) 157, 530, 549
TatI WGTACW 1 cut(s) 380
TscAI CASTG 3 cut(s) 124, 206, 292
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 227, 364, 489
TspRI CASTG 3 cut(s) 124, 206, 292
VneI GTGCAC 1 cut(s) 344
XapI RAATTY 2 cut(s) 530, 549
XceI RCATGY 1 cut(s) 452
XspI CTAG 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.