Rmu_sc0002722.1_g000001

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002722.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 2892
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 412 bp
atggtatactatggaattcttgagggaggtggaggtcctatcatgggtgatttatgggctttgaagggtgtaatcgcagaagaaaatgaaacacctggatggacccaactgaagcttcctggtcaagctccttctgcacgttgtggccataccatcacatctggaggacactatctgttgctatttggaggccatggaactggtggctggttgagtcgttatgacatctattacaatgactgcatcatcttagacagggtttctgcacagtggaagcggttacctactggcaatgaaccccctcctgctcgagcataccattcactgacatgcattggctcacgttatctgttatttggtggttttgatggcaaatccacatttggtgatctatggtggttggttcctgaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

137

Amino Acids

15.01

Weight (kDa)

6.05

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_FBX42 PF13415 15 - 134 1e-17 FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 30 - 134 3.4e-21 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AciI CCGC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 94, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 115, 128
AluI AGCT 2 cut(s) 115, 128
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 145, 190
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 35, 102
AsuHPI GGTGA 2 cut(s) 59, 398
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 2 cut(s) 35, 102
BalI TGGCCA 1 cut(s) 147
BccI CCATC 3 cut(s) 93, 161, 362
BciT130I CCWGG 2 cut(s) 96, 120
Bme1390I CCNGG 2 cut(s) 96, 120
Bme18I GGWCC 2 cut(s) 35, 102
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 35, 102
BmiI GGNNCC 2 cut(s) 104, 405
BmrFI CCNGG 2 cut(s) 96, 120
BmsI GCATC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 205, 292
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 96, 120
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 205, 292
BsgI GTGCAG 2 cut(s) 120, 249
BshFI GGCC 2 cut(s) 147, 192
BsiHKCI CYCGRG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 2 cut(s) 147, 192
BsoBI CYCGRG 1 cut(s) 309
Bsp143I GATC 1 cut(s) 388
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 277
BspANI GGCC 2 cut(s) 147, 192
BspLI GGNNCC 2 cut(s) 104, 405
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 2 cut(s) 205, 292
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 388
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 96, 120
Bst4CI ACNGT 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 193
BstEII GGTNACC 1 cut(s) 279
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 1 cut(s) 391
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 2 cut(s) 96, 120
BstNSI RCATGY 1 cut(s) 333
BstPI GGTNACC 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 94, 118
BstXI CCANNNNNNTGG 1 cut(s) 200
BstZ17I GTATAC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 147, 192
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 275, 323
Cfr13I GGNCC 2 cut(s) 35, 102
CviAII CATG 3 cut(s) 43, 194, 330
CviJI RGCY 7 cut(s) 59, 115, 128, 147, 192, 207, 339
CviKI_1 RGCY 7 cut(s) 59, 115, 128, 147, 192, 207, 339
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 35, 102
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 94, 118
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 46, 197, 333
FatI CATG 3 cut(s) 42, 193, 329
FblI GTMKAC 1 cut(s) 6
FokI GGATG 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 147, 192
Hin1II CATG 3 cut(s) 46, 197, 333
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 214
HphI GGTGA 2 cut(s) 59, 398
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 20, 162, 407
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 58, 141
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 2 cut(s) 139, 343
HpyCH4V TGCA 4 cut(s) 137, 243, 266, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 139, 343
Hsp92II CATG 3 cut(s) 46, 197, 333
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 133
LweI GCATC 1 cut(s) 252
MaeII ACGT 2 cut(s) 139, 343
MaeIII GTNAC 1 cut(s) 279
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 6 cut(s) 16, 20, 26, 158, 182, 312
Mox20I TGGCCA 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 335
MscI TGGCCA 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 97, 328
Msp20I TGGCCA 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 96, 120
MvaI CCWGG 2 cut(s) 96, 120
MwoI GCNNNNNNNGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 193
NdeII GATC 1 cut(s) 388
NlaIII CATG 3 cut(s) 46, 197, 333
NlaIV GGNNCC 2 cut(s) 104, 405
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 309
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 94, 118
PspEI GGTNACC 1 cut(s) 279
PspGI CCWGG 2 cut(s) 94, 118
PspN4I GGNNCC 2 cut(s) 104, 405
PspPI GGNCC 2 cut(s) 35, 102
PspPPI RGGWCCY 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 97, 328
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 2 cut(s) 35, 102
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 96, 120
SetI ASST 8 cut(s) 31, 37, 97, 117, 130, 142, 286, 346
SfaNI GCATC 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 35, 102
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 97, 328
SmlI CTYRAG 2 cut(s) 20, 309
SmoI CTYRAG 2 cut(s) 20, 309
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 94, 118
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 2 cut(s) 142, 346
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 15
TscAI CASTG 2 cut(s) 275, 330
TspDTI ATGAA 2 cut(s) 102, 309
TspRI CASTG 2 cut(s) 275, 330
VpaK11BI GGWCC 2 cut(s) 35, 102
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.