Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002722.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17281 .. 22025

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgcaagcagcactggaggccatggtagcccactctgtgatgctctcagcttactcatcccccactctcttcgcccaaattcaaacccgtaacccccgcccaactctccactccgccttccacagcgtctctctcaagctccccatcaagtcccaatcccaatccacgtctctcgccaccgccgcctcccccaagcccctcacagtcatcgctgccaccaagaaggttgttgccgtccttaagggcacttcaaccgtcgaaggtgtcgtcaccttggtcccaatcccaatccatgtctctcgccaccgccgcctcccccaagcccctcacagtcatcgctgccaccaagaaggtttcttacatgggctattgtttgttactctgaaattggtttttgttaccgtcgaaggcgtcttcaatcttgatttaggctgctcagctctatttgtggaatggcctccagaaattgatgtttcattgcatctcccagaaaagaatgagttcattcctactgatttttccatctgttctgatggtcttgatactacagatacagcttctccgagatgtatactggatgagccattgcttggtttcggtggtcggaaactctccactctagcggagcagcagccactggtgctcaagttcgataacagaacccttctcaagggcaacatcaccgtcaatctattatggtatggtcactttaccccaatccagcgctccataattgtagacttcatccagtcccttagttcccagcgtcgtgcccaactccttccctcaacttcttcctggtggaaaaccaccgagcaatacaagatcggatcttccaccgtcccctccaccagtccctacgacatcctccgcggcgtcccctaccctgccctctacacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

300

Amino Acids

33.0

Weight (kDa)

9.05

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_M	PF16187	155 - 196	1.7e-06	Middle or third domain of peptidase_M16
Phi_1	PF04674	215 - 276	5.3e-18	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	2 cut(s)	571, 738
AccII	CGCG	1 cut(s)	873
AciI	CCGC	9 cut(s)	97, 114, 180, 183, 307, 310, 623, 871, 873
AclWI	GGATC	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	78
AcyI	GRCGYC	2 cut(s)	411, 876
AdeI	CACNNNGTG	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	725
AfiI	CCNNNNNNNGG	2 cut(s)	590, 670
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	83, 252, 418
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	797
AluBI	AGCT	4 cut(s)	50, 139, 440, 557
AluI	AGCT	4 cut(s)	50, 139, 440, 557
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	133, 174, 301
AlwI	GGATC	1 cut(s)	838
AlwNI	CAGNNNCTG	1 cut(s)	637
Aor51HI	AGCGCT	1 cut(s)	725
AoxI	GGCC	2 cut(s)	18, 455
ApeKI	GCWGC	6 cut(s)	8, 212, 339, 432, 628, 631
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	262, 673
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	2 cut(s)	248, 775
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	6 cut(s)	20, 199, 326, 419, 640, 643
BccI	CCATC	3 cut(s)	152, 527, 530
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	133, 174, 301
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	727
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	9 cut(s)	9, 183, 213, 310, 340, 433, 629, 632, 874
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	9 cut(s)	10, 184, 214, 311, 341, 434, 630, 633, 875
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	2 cut(s)	30, 490
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	2 cut(s)	35, 444
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	3 cut(s)	119, 629, 653
BsaHI	GRCGYC	2 cut(s)	411, 876
BsaJI	CCNNGG	3 cut(s)	21, 273, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 670
Bse1I	ACTGG	5 cut(s)	18, 579, 642, 748, 852
Bse3DI	GCAATG	2 cut(s)	476, 584
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	21, 273, 871
BseGI	GGATG	4 cut(s)	56, 583, 744, 864
BseLI	CCNNNNNNNGG	2 cut(s)	590, 670
BseMI	GCAATG	2 cut(s)	476, 584
BseMII	CTCAG	2 cut(s)	60, 450
BseNI	ACTGG	5 cut(s)	18, 579, 642, 748, 852
BseSI	GKGCMC	2 cut(s)	248, 775
BseXI	GCAGC	6 cut(s)	20, 199, 326, 419, 640, 643
BseYI	CCCAGC	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	2 cut(s)	20, 457
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	6 cut(s)	136, 263, 736, 827, 840, 863
BslI	CCNNNNNNNGG	2 cut(s)	590, 670
BsmAI	GTCTC	3 cut(s)	133, 174, 301
BsmBI	CGTCTC	2 cut(s)	133, 174
BsmFI	GGGAC	6 cut(s)	136, 263, 736, 827, 840, 863
BsnI	GGCC	2 cut(s)	20, 457
Bsp1286I	GDGCHC	3 cut(s)	248, 645, 775
Bsp143I	GATC	2 cut(s)	825, 830
Bsp1720I	GCTNAGC	1 cut(s)	436
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	9 cut(s)	97, 114, 180, 183, 307, 310, 623, 871, 873
BspANI	GGCC	2 cut(s)	20, 457
BspCNI	CTCAG	2 cut(s)	59, 449
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	838
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	476, 584
BsrI	ACTGG	5 cut(s)	18, 579, 642, 748, 852
BssECI	CCNNGG	3 cut(s)	21, 273, 871
BssMI	GATC	2 cut(s)	825, 830
BssNAI	GTATAC	1 cut(s)	572
BssNI	GRCGYC	2 cut(s)	411, 876
BssT1I	CCWWGG	2 cut(s)	21, 273
Bst1107I	GTATAC	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	6 cut(s)	205, 256, 332, 403, 685, 841
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	2 cut(s)	411, 876
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	46, 436, 755
BstDSI	CCRYGG	2 cut(s)	21, 871
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	4 cut(s)	56, 583, 744, 864
BstFNI	CGCG	1 cut(s)	873
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	2 cut(s)	828, 833
BstMAI	GTCTC	3 cut(s)	133, 174, 301
BstMBI	GATC	2 cut(s)	825, 830
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 182, 309, 640
BstNI	CCWGG	1 cut(s)	799
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	2 cut(s)	248, 775
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	6 cut(s)	20, 199, 326, 419, 640, 643
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BstZ17I	GTATAC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	20, 457
BtgI	CCRYGG	2 cut(s)	21, 871
BtgZI	GCGATG	2 cut(s)	193, 320
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	4 cut(s)	56, 583, 744, 864
BtsIMutI	CAGTG	2 cut(s)	11, 635
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	874
CseI	GACGC	4 cut(s)	115, 400, 755, 865
CviAII	CATG	3 cut(s)	22, 293, 362
DdeI	CTNAG	3 cut(s)	46, 436, 755
DpnI	GATC	2 cut(s)	827, 832
DpnII	GATC	2 cut(s)	825, 830
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	21, 273
Eco47I	GGWCC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	725
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	2 cut(s)	21, 273
ErhI	CCWWGG	2 cut(s)	21, 273
Esp3I	CGTCTC	2 cut(s)	133, 174
FaeI	CATG	3 cut(s)	25, 296, 365
FaiI	YATR	7 cut(s)	23, 294, 363, 572, 697, 702, 731
FaqI	GGGAC	6 cut(s)	136, 263, 736, 827, 840, 863
FatI	CATG	3 cut(s)	21, 292, 361
FauI	CCCGC	1 cut(s)	104
FblI	GTMKAC	2 cut(s)	571, 738
Fnu4HI	GCNGC	9 cut(s)	9, 183, 213, 310, 340, 433, 629, 632, 874
FokI	GGATG	4 cut(s)	43, 590, 731, 851
Fsp4HI	GCNGC	9 cut(s)	9, 183, 213, 310, 340, 433, 629, 632, 874
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	9 cut(s)	9, 183, 213, 310, 340, 433, 629, 632, 874
GsaI	CCCAGC	1 cut(s)	766
GsuI	CTGGAG	2 cut(s)	35, 444
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	2 cut(s)	20, 457
HgaI	GACGC	4 cut(s)	115, 400, 755, 865
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	2 cut(s)	411, 876
Hin1II	CATG	3 cut(s)	25, 296, 365
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HphI	GGTGA	2 cut(s)	262, 673
Hpy166II	GTNNAC	2 cut(s)	572, 739
Hpy188I	TCNGA	5 cut(s)	384, 532, 564, 606, 830
Hpy188III	TCNNGA	3 cut(s)	422, 461, 539
Hpy8I	GTNNAC	2 cut(s)	572, 739
Hpy99I	CGWCG	3 cut(s)	260, 407, 771
HpyAV	CCTTC	7 cut(s)	127, 217, 254, 344, 401, 674, 791
HpyCH4III	ACNGT	6 cut(s)	205, 256, 332, 403, 685, 841
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	4, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 182, 309, 640
HpyF3I	CTNAG	3 cut(s)	46, 436, 755
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	2 cut(s)	411, 876
Hsp92II	CATG	3 cut(s)	25, 296, 365
HspAI	GCGC	1 cut(s)	724
KspI	CCGCGG	1 cut(s)	874
Kzo9I	GATC	2 cut(s)	825, 830
LmnI	GCTCC	3 cut(s)	144, 625, 731
Lsp1109I	GCAGC	6 cut(s)	20, 199, 326, 419, 640, 643
LweI	GCATC	2 cut(s)	30, 490
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	5 cut(s)	89, 268, 376, 397, 704
MalI	GATC	2 cut(s)	827, 832
MboI	GATC	2 cut(s)	825, 830
MboII	GAAGA	4 cut(s)	61, 406, 786, 825
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	248, 645, 775
MluCI	AATT	4 cut(s)	78, 386, 465, 732
MmeI	TCCRAC	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 182, 309, 640
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	825, 830
NlaIII	CATG	3 cut(s)	25, 296, 365
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	268, 704
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	9 cut(s)	10, 184, 214, 311, 341, 434, 630, 633, 875
Psp6I	CCWGG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	830
SacII	CCGCGG	1 cut(s)	874
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	9 cut(s)	9, 183, 213, 310, 340, 433, 629, 632, 874
Sau3AI	GATC	2 cut(s)	825, 830
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	3 cut(s)	248, 645, 775
SfaNI	GCATC	2 cut(s)	30, 490
SfcI	CTRYAG	1 cut(s)	546
Sfr303I	CCGCGG	1 cut(s)	874
SgrBI	CCGCGG	1 cut(s)	874
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	4 cut(s)	134, 239, 644, 668
SmoI	CTYRAG	4 cut(s)	134, 239, 644, 668
Sse9I	AATT	4 cut(s)	78, 386, 465, 732
SsiI	CCGC	9 cut(s)	97, 114, 180, 183, 307, 310, 623, 871, 873
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	2 cut(s)	21, 273
TaaI	ACNGT	6 cut(s)	205, 256, 332, 403, 685, 841
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	3 cut(s)	258, 405, 651
TasI	AATT	4 cut(s)	78, 386, 465, 732
TauI	GCSGC	3 cut(s)	185, 312, 876
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	18, 642
TseFI	GTSAC	2 cut(s)	268, 704
TseI	GCWGC	6 cut(s)	8, 212, 339, 432, 628, 631
Tsp45I	GTSAC	2 cut(s)	268, 704
TspDTI	ATGAA	3 cut(s)	465, 493, 733
TspRI	CASTG	2 cut(s)	18, 642
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	1 cut(s)	78
XmiI	GTMKAC	2 cut(s)	571, 738
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.