Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39022 .. 41475

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgataactggatgcacaatttttggcgcccaatacgtaagtcttggagatccgcctatacctcacataaatgagatgcgcgatggaaaatgtaggctcgttactcaaacagctattgtttcacggccttccctaaaagtattccttaagacgagaagaggatttgttcgcatagccatggagaatggctatcccctggtttcagttttctactttgatcaggacgcggtggcagcgatagtggtcgatgaccatggtgatcaggagtgggtcgttgtggtgcttctggatggcgtcctcgttgagatggaaggctatcaagttctattcgacgtggggggtatggcagcctgggcccggaatgatgtccctgtgattgttccatatgtcctcataagaagtagtcaatgtggtataaatctcgcatcggggtgttgcgactcgctggtgatctcgatatcgggtgttgctgtatggtgcatcgagatgtcgattgctggagttgtatttttccttctcggggctttttccgtattgcttgtctctcctatcgctatagccttggcactcccttggggctctgttactttgctgggcaggttcgtctctgctgatgtctttgttcccggtatcgggattgtttgccagaggtgcggttgccgggtgcacgttggtattggtatcgaggacgaaggtagcttactcagcttgagcaaaggctgtagcggcatcgaagaggtcgtcatatgtggcagggggattggtgttgatttgcaacaagaagtatcctggttggagtgcctgtttaaatgcggatgcggccaggactgggttaagggagcagcattgagtggcctgcttctgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

289

Amino Acids

30.81

Weight (kDa)

4.78

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	46 - 86	7e-06	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	2 cut(s)	81, 227
AciI	CCGC	6 cut(s)	53, 227, 654, 726, 813, 819
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	820
AcyI	GRCGYC	2 cut(s)	27, 294
AfiI	CCNNNNNNNGG	5 cut(s)	357, 520, 632, 633, 829
AflII	CTTAAG	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	195, 350, 788, 822
AluBI	AGCT	3 cut(s)	113, 699, 708
AluI	AGCT	3 cut(s)	113, 699, 708
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	2 cut(s)	547, 610
Alw44I	GTGCAC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	4 cut(s)	125, 354, 820, 853
ApaI	GGGCCC	1 cut(s)	358
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	3 cut(s)	233, 347, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
AspLEI	GCGC	2 cut(s)	29, 81
AspS9I	GGNCC	2 cut(s)	354, 355
AsuC2I	CCSGG	3 cut(s)	358, 627, 662
AsuHPI	GGTGA	2 cut(s)	269, 460
AvaI	CYCGRG	1 cut(s)	518
BaeGI	GKGCMC	2 cut(s)	358, 669
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	358, 581
BarI	GAAGNNNNNNTAC	4 cut(s)	498, 530, 684, 716
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	245, 359, 854
BccI	CCATC	3 cut(s)	77, 284, 301
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	4 cut(s)	197, 352, 790, 824
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	2 cut(s)	217, 259
BcnI	CCSGG	3 cut(s)	358, 627, 662
BcoDI	GTCTC	2 cut(s)	547, 610
BfmI	CTRYAG	2 cut(s)	555, 721
BfoI	RGCGCY	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	796
BisI	GCNGC	5 cut(s)	234, 348, 727, 820, 843
BlsI	GCNGC	5 cut(s)	235, 349, 728, 821, 844
Bme1390I	CCNGG	7 cut(s)	197, 352, 358, 627, 662, 790, 824
BmeT110I	CYCGRG	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	354, 355
BmiI	GGNNCC	2 cut(s)	28, 356
BmrFI	CCNGG	7 cut(s)	197, 352, 358, 627, 662, 790, 824
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	6 cut(s)	2, 66, 434, 489, 738, 806
BmuI	ACTGGG	1 cut(s)	838
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	3 cut(s)	358, 627, 662
BsaAI	YACGTR	1 cut(s)	37
BsaHI	GRCGYC	2 cut(s)	27, 294
BsaJI	CCNNGG	6 cut(s)	177, 195, 253, 351, 561, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bsc4I	CCNNNNNNNGG	5 cut(s)	357, 520, 632, 633, 829
Bse1I	ACTGG	2 cut(s)	13, 833
BseBI	CCWGG	4 cut(s)	197, 352, 790, 824
BseDI	CCNNGG	6 cut(s)	177, 195, 253, 351, 561, 572
BseGI	GGATG	3 cut(s)	17, 295, 821
BseLI	CCNNNNNNNGG	5 cut(s)	357, 520, 632, 633, 829
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	13, 833
BseSI	GKGCMC	2 cut(s)	358, 669
BseXI	GCAGC	3 cut(s)	245, 359, 854
BseYI	CCCAGC	1 cut(s)	592
Bsh1236I	CGCG	2 cut(s)	81, 227
BshFI	GGCC	4 cut(s)	127, 356, 822, 855
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	3 cut(s)	358, 627, 661
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	5 cut(s)	357, 520, 632, 633, 829
BsmAI	GTCTC	2 cut(s)	547, 610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	4 cut(s)	127, 356, 822, 855
BsoBI	CYCGRG	1 cut(s)	518
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	358, 581, 669
Bsp143I	GATC	4 cut(s)	49, 217, 259, 450
Bsp19I	CCATGG	2 cut(s)	177, 253
BspACI	CCGC	6 cut(s)	53, 227, 654, 726, 813, 819
BspANI	GGCC	4 cut(s)	127, 356, 822, 855
BspCNI	CTCAG	1 cut(s)	717
BspFNI	CGCG	2 cut(s)	81, 227
BspLI	GGNNCC	2 cut(s)	28, 356
BspMI	ACCTGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	13, 833
BssECI	CCNNGG	6 cut(s)	177, 195, 253, 351, 561, 572
BssMI	GATC	4 cut(s)	49, 217, 259, 450
BssNI	GRCGYC	2 cut(s)	27, 294
BssT1I	CCWWGG	4 cut(s)	177, 253, 561, 572
Bst2UI	CCWGG	4 cut(s)	197, 352, 790, 824
Bst6I	CTCTTC	2 cut(s)	151, 729
BstACI	GRCGYC	2 cut(s)	27, 294
BstAFI	CTTAAG	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	857
BstDEI	CTNAG	1 cut(s)	704
BstDSI	CCRYGG	2 cut(s)	177, 253
BstF5I	GGATG	3 cut(s)	17, 295, 821
BstFNI	CGCG	2 cut(s)	81, 227
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 81
BstKTI	GATC	4 cut(s)	52, 220, 262, 453
BstMAI	GTCTC	2 cut(s)	547, 610
BstMBI	GATC	4 cut(s)	49, 217, 259, 450
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 353, 651, 705, 726, 819
BstNI	CCWGG	4 cut(s)	197, 352, 790, 824
BstSCI	CCNGG	7 cut(s)	195, 350, 356, 625, 660, 788, 822
BstSFI	CTRYAG	2 cut(s)	555, 721
BstSLI	GKGCMC	2 cut(s)	358, 669
BstSNI	TACGTA	1 cut(s)	37
BstUI	CGCG	2 cut(s)	81, 227
BstV1I	GCAGC	3 cut(s)	245, 359, 854
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	4 cut(s)	127, 356, 822, 855
BtgI	CCRYGG	2 cut(s)	177, 253
BtgZI	GCGATG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	17, 295, 821
BveI	ACCTGC	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	857
CfoI	GCGC	2 cut(s)	29, 81
Cfr13I	GGNCC	2 cut(s)	354, 355
CseI	GACGC	2 cut(s)	233, 283
CviAII	CATG	2 cut(s)	178, 254
DdeI	CTNAG	1 cut(s)	704
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	4 cut(s)	51, 219, 261, 452
DpnII	GATC	4 cut(s)	49, 217, 259, 450
DraI	TTTAAA	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	2 cut(s)	151, 729
EarI	CTCTTC	2 cut(s)	151, 729
EciI	GGCGGA	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	37
Eco130I	CCWWGG	4 cut(s)	177, 253, 561, 572
Eco24I	GRGCYC	2 cut(s)	358, 581
Eco32I	GATATC	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	518
EcoRII	CCWGG	4 cut(s)	195, 350, 788, 822
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	4 cut(s)	177, 253, 561, 572
EcoT38I	GRGCYC	2 cut(s)	358, 581
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
ErhI	CCWWGG	4 cut(s)	177, 253, 561, 572
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	2 cut(s)	181, 257
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	177, 253
FauNDI	CATATG	2 cut(s)	385, 746
FbaI	TGATCA	2 cut(s)	217, 259
Fnu4HI	GCNGC	5 cut(s)	234, 348, 727, 820, 843
FokI	GGATG	3 cut(s)	24, 302, 828
FriOI	GRGCYC	2 cut(s)	358, 581
Fsp4HI	GCNGC	5 cut(s)	234, 348, 727, 820, 843
GlaI	GCGC	2 cut(s)	28, 80
GluI	GCNGC	5 cut(s)	234, 348, 727, 820, 843
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	127, 356, 822, 855
HapII	CCGG	3 cut(s)	358, 627, 661
HgaI	GACGC	2 cut(s)	233, 283
HhaI	GCGC	2 cut(s)	29, 81
Hin1I	GRCGYC	2 cut(s)	27, 294
Hin1II	CATG	2 cut(s)	181, 257
Hin6I	GCGC	2 cut(s)	27, 79
HinP1I	GCGC	2 cut(s)	27, 79
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	3 cut(s)	358, 627, 661
HphI	GGTGA	2 cut(s)	269, 460
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188III	TCNNGA	6 cut(s)	221, 263, 287, 454, 484, 634
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	138, 305, 524, 686
HpyCH4IV	ACGT	3 cut(s)	36, 333, 669
HpyCH4V	TGCA	4 cut(s)	15, 480, 667, 775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 353, 651, 705, 726, 819
HpyF3I	CTNAG	1 cut(s)	704
HpySE526I	ACGT	3 cut(s)	36, 333, 669
Hsp92I	GRCGYC	2 cut(s)	27, 294
Hsp92II	CATG	2 cut(s)	181, 257
HspAI	GCGC	2 cut(s)	27, 79
KasI	GGCGCC	1 cut(s)	26
Ksp22I	TGATCA	2 cut(s)	217, 259
Kzo9I	GATC	4 cut(s)	49, 217, 259, 450
LmnI	GCTCC	1 cut(s)	839
Lsp1109I	GCAGC	3 cut(s)	245, 359, 854
LweI	GCATC	6 cut(s)	2, 66, 434, 489, 738, 806
MaeII	ACGT	3 cut(s)	36, 333, 669
MaeIII	GTNAC	2 cut(s)	100, 583
MalI	GATC	4 cut(s)	51, 219, 261, 452
MboI	GATC	4 cut(s)	49, 217, 259, 450
MboII	GAAGA	2 cut(s)	168, 746
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	3 cut(s)	358, 581, 669
MluCI	AATT	1 cut(s)	18
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	7 cut(s)	72, 152, 308, 401, 642, 679, 730
MseI	TTAA	3 cut(s)	147, 807, 834
MslI	CAYNNNNRTG	4 cut(s)	69, 176, 430, 485
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	3 cut(s)	358, 627, 661
MspR9I	CCNGG	7 cut(s)	197, 352, 358, 627, 662, 790, 824
MvaI	CCWGG	4 cut(s)	197, 352, 790, 824
MvnI	CGCG	2 cut(s)	81, 227
MwoI	GCNNNNNNNGC	6 cut(s)	233, 353, 651, 705, 726, 819
NarI	GGCGCC	1 cut(s)	27
NciI	CCSGG	3 cut(s)	358, 627, 662
NcoI	CCATGG	2 cut(s)	177, 253
NdeI	CATATG	2 cut(s)	385, 746
NdeII	GATC	4 cut(s)	49, 217, 259, 450
NlaIII	CATG	2 cut(s)	181, 257
NlaIV	GGNNCC	2 cut(s)	28, 356
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PkrI	GCNGC	5 cut(s)	235, 349, 728, 821, 844
PleI	GAGTC	1 cut(s)	434
PluTI	GGCGCC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	4 cut(s)	195, 350, 788, 822
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	4 cut(s)	195, 350, 788, 822
PspN4I	GGNNCC	2 cut(s)	28, 356
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	354, 355
PsuI	RGATCY	1 cut(s)	49
RseI	CAYNNNNRTG	4 cut(s)	69, 176, 430, 485
SaqAI	TTAA	3 cut(s)	147, 807, 834
SatI	GCNGC	5 cut(s)	234, 348, 727, 820, 843
Sau3AI	GATC	4 cut(s)	49, 217, 259, 450
Sau96I	GGNCC	2 cut(s)	354, 355
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	7 cut(s)	197, 352, 358, 627, 662, 790, 824
SduI	GDGCHC	3 cut(s)	358, 581, 669
SfaNI	GCATC	6 cut(s)	2, 66, 434, 489, 738, 806
SfcI	CTRYAG	2 cut(s)	555, 721
SfoI	GGCGCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	4 cut(s)	69, 176, 430, 485
SmlI	CTYRAG	2 cut(s)	146, 709
SmoI	CTYRAG	2 cut(s)	146, 709
SnaBI	TACGTA	1 cut(s)	37
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	6 cut(s)	53, 227, 654, 726, 813, 819
SspDI	GGCGCC	1 cut(s)	26
StyD4I	CCNGG	7 cut(s)	195, 350, 356, 625, 660, 788, 822
StyI	CCWWGG	4 cut(s)	177, 253, 561, 572
TaiI	ACGT	3 cut(s)	39, 336, 672
TaqI	TCGA	7 cut(s)	246, 330, 455, 483, 491, 684, 732
TasI	AATT	1 cut(s)	18
TauI	GCSGC	2 cut(s)	729, 822
Tru1I	TTAA	3 cut(s)	147, 807, 834
Tru9I	TTAA	3 cut(s)	147, 807, 834
TseI	GCWGC	3 cut(s)	233, 347, 842
TspGWI	ACGGA	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.