Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002743.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

gctgctaagtacccggtgtttggggaagagattgagcttcttcgtagtatactggctgatttgctgaaaagaatggctgagtgccttaccaaagtggtagggtgcttggctgggaaaggaaagagggacagtgatattgttcattctggatggtctcagtatcttgctgttttgaaggaactaaatgggatttgtaaactctatcagggtggggaagaacaattttggatgactctgaggcttagaaagactgcaatatgtgcactagttgtgaaatatgcaaagcgaagtgatgatcatcagtggcttcttgagcacaaagatgtacttgatttcgagtctcgaaggcatttggctatgagcctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

8.71

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	11, 327
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	2 cut(s)	265, 318
Alw26I	GTCTC	2 cut(s)	159, 345
Alw44I	GTGCAC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	2
AsuC2I	CCSGG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	265
Bbv12I	GWGCWC	2 cut(s)	265, 318
BccI	CCATC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	159, 345
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	3
BlsI	GCNGC	1 cut(s)	4
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	297
BseGI	GGATG	2 cut(s)	155, 234
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	69, 170, 227
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	265, 318
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	159, 345
BsmFI	GGGAC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	265, 318
Bsp143I	GATC	1 cut(s)	295
BspCNI	CTCAG	3 cut(s)	70, 169, 228
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	295
BssNAI	GTATAC	1 cut(s)	50
Bst1107I	GTATAC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	6, 78, 156, 236, 242
BstF5I	GGATG	2 cut(s)	155, 234
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	159, 345
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 313
BstSCI	CCNGG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	265
BstZ17I	GTATAC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	155, 234
BtsIMutI	CAGTG	2 cut(s)	136, 308
Csp6I	GTAC	2 cut(s)	10, 326
CviJI	RGCY	8 cut(s)	37, 56, 77, 110, 241, 307, 356, 363
CviKI_1	RGCY	8 cut(s)	37, 56, 77, 110, 241, 307, 356, 363
CviQI	GTAC	2 cut(s)	10, 326
DdeI	CTNAG	5 cut(s)	6, 78, 156, 236, 242
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	159
FaiI	YATR	5 cut(s)	50, 259, 279, 359, 367
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	3
FokI	GGATG	2 cut(s)	162, 241
Fsp4HI	GCNGC	1 cut(s)	3
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	3
GsaI	CCCAGC	1 cut(s)	114
HapII	CCGG	1 cut(s)	14
HinfI	GANTC	2 cut(s)	232, 338
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	3 cut(s)	50, 197, 263
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	3 cut(s)	147, 311, 342
Hpy8I	GTNNAC	3 cut(s)	50, 197, 263
HpyAV	CCTTC	2 cut(s)	169, 339
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	254, 263, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 313
HpyF3I	CTNAG	5 cut(s)	6, 78, 156, 236, 242
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	27, 38, 96, 132, 191
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	32, 38, 227
MhlI	GDGCHC	2 cut(s)	265, 318
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	226, 347
MnlI	CCTC	2 cut(s)	117, 231
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	260, 313
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	4
PleI	GAGTC	2 cut(s)	226, 346
PpsI	GAGTC	2 cut(s)	226, 346
PspFI	CCCAGC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	11, 327
RsaNI	GTAC	2 cut(s)	10, 326
RseI	CAYNNNNRTG	1 cut(s)	321
SatI	GCNGC	1 cut(s)	3
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	226, 347
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	265, 318
SetI	ASST	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	336, 343
TasI	AATT	1 cut(s)	221
TatI	WGTACW	1 cut(s)	325
TscAI	CASTG	2 cut(s)	136, 308
TseI	GCWGC	1 cut(s)	2
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	136, 308
VneI	GTGCAC	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.