Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002750.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

41143 .. 42593

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggatttcgggcggtttagacggaggcgctctccctctccccttgaaggtcgacggcgctcgctctcgtcgacagatctaaattttgaaggggaatgcgcggcttccgatcccgagcagctcaagcttgcgaaggaggacatcaaggagctcgtcaagactaagttctgccatccaattctggtaactaatcaattctgtcttgtgaatgctttgaagcttattcagcctatcaaagacaagtactctggtgtcacatacgcagacttgttccaattggctagtgctagcgctgtggaggatgctgggggcccaaagattcctatgaagtatgggagagttgatgtttcagcaccagagcagtgcccagaagaaggaaggcttcctgatgccggccccccttcacctgctgatcatctacgtgaggtgttctacagaatggggttaaatgacaaggaaatagttgcattatcaggggcacacactctagggaggtccagacctgaacgcaatggttggggcaagccagagacaaagtatacggtattgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010019 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0023052 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0070887 GO:0071588 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

184

Amino Acids

20.47

Weight (kDa)

8.65

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	68 - 167	3.8e-26	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccI	GTMKAC	3 cut(s)	52, 71, 539
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	13, 101
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	3 cut(s)	47, 374, 392
AgsI	TTSAA	4 cut(s)	47, 89, 217, 550
AluBI	AGCT	4 cut(s)	121, 127, 151, 220
AluI	AGCT	4 cut(s)	121, 127, 151, 220
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	292
AoxI	GGCC	2 cut(s)	310, 394
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	4 cut(s)	30, 60, 101, 293
AspS9I	GGNCC	4 cut(s)	310, 311, 395, 495
AsuHPI	GGTGA	1 cut(s)	396
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	495
BaeGI	GKGCMC	3 cut(s)	314, 368, 481
BanII	GRGCYC	2 cut(s)	153, 314
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	282, 288, 488
BfmI	CTRYAG	1 cut(s)	433
BfoI	RGCGCY	3 cut(s)	31, 61, 294
BfuAI	ACCTGC	1 cut(s)	415
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	102, 119
BlsI	GCNGC	2 cut(s)	103, 120
BmcAI	AGTACT	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	495
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	4 cut(s)	310, 311, 395, 495
BmiI	GGNNCC	3 cut(s)	311, 312, 397
BmsI	GCATC	2 cut(s)	292, 379
BmtI	GCTAGC	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 374, 392
Bse118I	RCCGGY	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	172, 307
BseLI	CCNNNNNNNGG	3 cut(s)	47, 374, 392
BseMI	GCAATG	1 cut(s)	517
BseSI	GKGCMC	3 cut(s)	314, 368, 481
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	312, 396
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	47, 374, 392
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	2 cut(s)	101, 214
BsnI	GGCC	2 cut(s)	312, 396
BsoBI	CYCGRG	1 cut(s)	113
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	4 cut(s)	153, 314, 368, 481
Bsp143I	GATC	3 cut(s)	76, 109, 412
BspACI	CCGC	2 cut(s)	13, 101
BspANI	GGCC	2 cut(s)	312, 396
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	3 cut(s)	311, 312, 397
BspMI	ACCTGC	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssMI	GATC	3 cut(s)	76, 109, 412
BssNAI	GTATAC	1 cut(s)	540
Bst1107I	GTATAC	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	5 cut(s)	62, 129, 289, 394, 524
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	172, 307
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	3 cut(s)	31, 61, 294
BstHHI	GCGC	4 cut(s)	30, 60, 101, 293
BstKTI	GATC	3 cut(s)	79, 112, 415
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	76, 109, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 226
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	3 cut(s)	314, 368, 481
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BstZ17I	GTATAC	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	312, 396
BtsCI	GGATG	2 cut(s)	172, 307
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	62, 129, 289, 394, 524
CfoI	GCGC	4 cut(s)	30, 60, 101, 293
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	4 cut(s)	310, 311, 395, 495
Csp6I	GTAC	1 cut(s)	244
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	78, 111, 414
DpnII	GATC	3 cut(s)	76, 109, 412
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	153, 314
Eco47I	GGWCC	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	153, 314
FaiI	YATR	4 cut(s)	259, 326, 333, 540
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	3 cut(s)	52, 71, 539
Fnu4HI	GCNGC	2 cut(s)	102, 119
FokI	GGATG	2 cut(s)	159, 314
FriOI	GRGCYC	2 cut(s)	153, 314
Fsp4HI	GCNGC	2 cut(s)	102, 119
FspBI	CTAG	3 cut(s)	282, 288, 488
GlaI	GCGC	4 cut(s)	29, 59, 100, 292
GluI	GCNGC	2 cut(s)	102, 119
GsaI	CCCAGC	1 cut(s)	309
HaeII	RGCGCY	3 cut(s)	31, 61, 294
HaeIII	GGCC	2 cut(s)	312, 396
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	4 cut(s)	30, 60, 101, 293
Hin6I	GCGC	4 cut(s)	28, 58, 99, 291
HinP1I	GCGC	4 cut(s)	28, 58, 99, 291
HincII	GTYRAC	2 cut(s)	53, 72
HindII	GTYRAC	2 cut(s)	53, 72
HindIII	AAGCTT	2 cut(s)	125, 218
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	3 cut(s)	53, 72, 540
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	4 cut(s)	113, 157, 386, 498
Hpy8I	GTNNAC	3 cut(s)	53, 72, 540
Hpy99I	CGWCG	2 cut(s)	57, 73
HpyAV	CCTTC	6 cut(s)	41, 83, 127, 368, 372, 411
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 226
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	421
HspAI	GCGC	4 cut(s)	28, 58, 99, 291
KroI	GCCGGC	1 cut(s)	392
KroNI	GCCGGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	76, 109, 412
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	292, 379
MaeI	CTAG	3 cut(s)	282, 288, 488
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	2 cut(s)	184, 253
MalI	GATC	3 cut(s)	78, 111, 414
MboI	GATC	3 cut(s)	76, 109, 412
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	4 cut(s)	153, 314, 368, 481
MluCI	AATT	5 cut(s)	82, 177, 194, 275, 550
MnlI	CCTC	6 cut(s)	18, 46, 130, 292, 418, 486
MroNI	GCCGGC	1 cut(s)	392
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	275
Mva1269I	GAATGC	2 cut(s)	101, 214
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	124, 226
NaeI	GCCGGC	1 cut(s)	394
NdeII	GATC	3 cut(s)	76, 109, 412
NgoMIV	GCCGGC	1 cut(s)	392
NheI	GCTAGC	1 cut(s)	287
NlaIV	GGNNCC	3 cut(s)	311, 312, 397
NmuCI	GTSAC	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	2 cut(s)	101, 214
PdiI	GCCGGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	103, 120
Ppu21I	YACGTR	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	311, 312, 397
PspOMI	GGGCCC	1 cut(s)	310
PspPI	GGNCC	4 cut(s)	310, 311, 395, 495
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	2 cut(s)	51, 70
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	102, 119
Sau3AI	GATC	3 cut(s)	76, 109, 412
Sau96I	GGNCC	4 cut(s)	310, 311, 395, 495
ScaI	AGTACT	1 cut(s)	245
SduI	GDGCHC	4 cut(s)	153, 314, 368, 481
SfaNI	GCATC	2 cut(s)	292, 379
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	5 cut(s)	82, 177, 194, 275, 550
SsiI	CCGC	2 cut(s)	13, 101
SspMI	CTAG	3 cut(s)	282, 288, 488
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	52, 71
TasI	AATT	5 cut(s)	82, 177, 194, 275, 550
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	82
XmiI	GTMKAC	3 cut(s)	52, 71, 539
XspI	CTAG	3 cut(s)	282, 288, 488
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.