Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002754.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

63637 .. 64110

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggggaagaaggtggccataataggagctgggatcagtggccttcttgcctgcaagtacaccctttcaaagggcattcaacccatcgtgttcgaatcctcgagcaccatcggaggggtatggaccaaaactgttgagagtaccaagctccaaaccaaagtcaccggaaacgttgtatacgccggcgacccgcgttccggatcgcacgaacccaatcgcggggcgttcgcgatccggatcggcaaacatagcgatcccagcctgcgttcaatcaacgtcaaagcccagtatcaatcaacgccaatcgcgttccggcgaccactttttcttggcggcggcggcggccgaagaaggttgatgttcttgaacctcagccatgttcttgaatctgggatttctgaagagataaagagaatcaatggatgcgaaaaggagatcttcgattttctgggaagattacaaaatctcctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

157

Amino Acids

17.02

Weight (kDa)

10.12

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 55	8.6e-10	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	4 cut(s)	193, 219, 230, 308
AccIII	TCCGGA	2 cut(s)	197, 234
AciI	CCGC	6 cut(s)	191, 219, 333, 336, 339, 342
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	5 cut(s)	41, 208, 226, 245, 248
AcoI	YGGCCR	2 cut(s)	15, 343
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	59, 142
AfiI	CCNNNNNNNGG	5 cut(s)	70, 114, 197, 218, 219
AgsI	TTSAA	5 cut(s)	69, 80, 270, 367, 386
AluBI	AGCT	2 cut(s)	29, 148
AluI	AGCT	2 cut(s)	29, 148
Alw21I	GWGCWC	1 cut(s)	107
AlwI	GGATC	5 cut(s)	41, 208, 226, 245, 248
Ama87I	CYCGRG	1 cut(s)	100
Aor13HI	TCCGGA	2 cut(s)	197, 234
AoxI	GGCC	3 cut(s)	15, 40, 343
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	2 cut(s)	92, 116
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	4 cut(s)	334, 337, 340, 343
BlsI	GCNGC	4 cut(s)	335, 338, 341, 344
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	236
BsaWI	WCCGGW	3 cut(s)	164, 197, 234
BsaXI	ACNNNNNCTCC	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 114, 197, 218, 219
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	236
BseAI	TCCGGA	2 cut(s)	197, 234
BseGI	GGATG	1 cut(s)	428
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	5 cut(s)	70, 114, 197, 218, 219
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	286
BseX3I	CGGCCG	1 cut(s)	343
BseYI	CCCAGC	2 cut(s)	29, 257
Bsh1236I	CGCG	4 cut(s)	193, 219, 230, 308
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	3 cut(s)	17, 42, 345
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	165, 183, 198, 235, 313
BslI	CCNNNNNNNGG	5 cut(s)	70, 114, 197, 218, 219
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	17, 42, 345
BsoBI	CYCGRG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp13I	TCCGGA	2 cut(s)	197, 234
Bsp143I	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
Bsp68I	TCGCGA	1 cut(s)	230
BspACI	CCGC	6 cut(s)	191, 219, 333, 336, 339, 342
BspANI	GGCC	3 cut(s)	17, 42, 345
BspCNI	CTCAG	1 cut(s)	384
BspEI	TCCGGA	2 cut(s)	197, 234
BspFNI	CGCG	4 cut(s)	193, 219, 230, 308
BspPI	GGATC	5 cut(s)	41, 208, 226, 245, 248
BspT104I	TTCGAA	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	182
BssMI	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
BssNAI	GTATAC	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	52, 184, 263
BstDEI	CTNAG	1 cut(s)	371
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	4 cut(s)	193, 219, 230, 308
BstKTI	GATC	6 cut(s)	36, 203, 234, 240, 256, 438
BstMBI	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 258, 339, 342
BstUI	CGCG	4 cut(s)	193, 219, 230, 308
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BstZ17I	GTATAC	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	17, 42, 345
BtsCI	GGATG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	52, 184, 263
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	58, 141
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	8 cut(s)	17, 29, 42, 148, 261, 284, 345, 375
CviKI_1	RGCY	8 cut(s)	17, 29, 42, 148, 261, 284, 345, 375
CviQI	GTAC	2 cut(s)	58, 141
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	6 cut(s)	35, 202, 233, 239, 255, 437
DpnII	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
EaeI	YGGCCR	2 cut(s)	15, 343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	123
Eco52I	CGGCCG	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	380
FaiI	YATR	6 cut(s)	20, 121, 178, 249, 378, 472
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	1 cut(s)	376
FauI	CCCGC	2 cut(s)	198, 212
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	334, 337, 340, 343
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	334, 337, 340, 343
GluI	GCNGC	4 cut(s)	334, 337, 340, 343
GsaI	CCCAGC	2 cut(s)	33, 261
HaeIII	GGCC	3 cut(s)	17, 42, 345
HapII	CCGG	5 cut(s)	165, 183, 198, 235, 313
Hin1II	CATG	1 cut(s)	380
HinfI	GANTC	3 cut(s)	95, 386, 414
HpaII	CCGG	5 cut(s)	165, 183, 198, 235, 313
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	60, 178
Hpy188I	TCNGA	2 cut(s)	113, 400
Hpy188III	TCNNGA	5 cut(s)	198, 229, 235, 364, 383
Hpy8I	GTNNAC	2 cut(s)	60, 178
HpyAV	CCTTC	3 cut(s)	4, 53, 345
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	171, 276
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 258, 339, 342
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	2 cut(s)	171, 276
Hsp92II	CATG	1 cut(s)	380
Kpn2I	TCCGGA	2 cut(s)	197, 234
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
LmnI	GCTCC	2 cut(s)	26, 153
LweI	GCATC	1 cut(s)	413
MaeII	ACGT	2 cut(s)	171, 276
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	6 cut(s)	35, 202, 233, 239, 255, 437
MboI	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
MboII	GAAGA	5 cut(s)	19, 360, 413, 430, 465
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MnlI	CCTC	3 cut(s)	107, 109, 380
Mox20I	TGGCCA	1 cut(s)	17
MreI	CGCCGGCG	1 cut(s)	182
MroI	TCCGGA	2 cut(s)	197, 234
MroNI	GCCGGC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	5 cut(s)	165, 183, 198, 235, 313
Mva1269I	GAATGC	1 cut(s)	75
MvnI	CGCG	4 cut(s)	193, 219, 230, 308
MwoI	GCNNNNNNNGC	4 cut(s)	249, 258, 339, 342
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	95, 386, 414
PkrI	GCNGC	4 cut(s)	335, 338, 341, 344
Psp1406I	AACGTT	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	29, 257
PspPI	GGNCC	1 cut(s)	123
PspXI	VCTCGAGB	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	435
RruI	TCGCGA	1 cut(s)	230
RsaI	GTAC	2 cut(s)	59, 142
RsaNI	GTAC	2 cut(s)	58, 141
SatI	GCNGC	4 cut(s)	334, 337, 340, 343
Sau3AI	GATC	6 cut(s)	33, 200, 231, 237, 253, 435
Sau96I	GGNCC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	7 cut(s)	15, 31, 150, 174, 279, 356, 372
SfaNI	GCATC	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SsiI	CCGC	6 cut(s)	191, 219, 333, 336, 339, 342
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	174, 279
TaqI	TCGA	3 cut(s)	93, 101, 441
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	4 cut(s)	336, 339, 342, 345
TfiI	GAWTC	3 cut(s)	95, 386, 414
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.