Rmu_sc0002754.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002754.1
OG0023089
Physical Location & Seq
Reverse (-)
115881 .. 122479
6599 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1398 bp
atgccaatctccattgtccagtcacctgacggtgtgccactagtccatttgggatcgcctcctcctcccctcgaagtttgcagcggtttggccggaggagagagaatcgaaaaaaagtgcggacgtccctcctccggcgtcgggaaggggacgatcgttgcactgcgagtgccggacgcaccctctggacatcccagacatcctcgatcaagcggcaaatgcgaaggtgatcggaaactcgacggtgtgcagcgagctcgccggaaaccatggaagcccagaaacctgcaatcccgacctcccccgacctccatttctgcccagaagaggtctgggacgcctccggcctccatccggctagccccgagccgccgtcgcggcttgaaagctcctgctgcgtcgacgtccacactttttctgggttgcggacgtctgcttcagatccttcccgtgatgtctgggatgtccagagggtgcgtccggcactcgcagtgcaacgatcgtccccttcccgacgccggaggagggacgtccgcactttttctgagttgcgcacgtcctcttcagaaccttccccttccccagactggcctgccaccctccctgcctgcagtagacccacgtccagcagcccgtgcccacaccccgccttctcacctgcaacggcgttgctgcacctgtacgcacggcccaactctcgcctattctcgcacggttcgctacccacctcgcctagcttcgcacgacccgagaaggccactgctcgccggtgctctccaccgtcgtagcctccagatcggattcgtcagcctacagatcggcctcagcccagcgcagcgcagatcccagcgctcttccacctgcgcacaccccgcctccaacagactcgctagcttgctgcttttgcctgcgtctcccacccatcagcaacagctctgcaagaaaaacaacagaacacaactgaccgttcagtggaatgaaatccgcttgcttgactataaaagggtaaatgagttcaacaaggatatgttgcgcctaaaagcacttctaaatttttgtggaaaggaactcacagaagatgatatgatccagaagactctttccacttttcctacttcagcaattatactagcgaaccagtataggctggagtacgataacaaaagaatcccaaccttcaacaagctgatcaacctactacaagtggctgagaggcatattgaggttcttttgaacaacaatgccaggccttttgggccaaataaaattcctgaggctaattatggcaaagtgaaaggtgccagtataggctggagtacgataacaaaagaatcacaaccttcaacaagcttatcaacctactgcaagtggctgagaggcataatgaggttcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

465

Amino Acids

51.08

Weight (kDa)

10.77

Isoelectric Point (pI)

67.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023089)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002754.1_g000029 Rmu_sc0003832.1_g000037 Rmu_sc0005579.1_g000005 Rmu_sc0016768.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 666, 869
AatII GACGTC 4 cut(s) 127, 407, 433, 533
Acc16I TGCGCA 2 cut(s) 553, 865
Acc36I ACCTGC 3 cut(s) 294, 666, 869
AccB1I GGYRCC 1 cut(s) 1298
AccI GTMKAC 2 cut(s) 401, 615
AccII CGCG 1 cut(s) 378
AclWI GGATC 4 cut(s) 61, 436, 837, 1081
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 1051, 1266
AcuI CTGAAG 3 cut(s) 422, 548, 1101
AcyI GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
AfaI GTAC 3 cut(s) 682, 1154, 1318
AfeI AGCGCT 1 cut(s) 851
AfiI CCNNNNNNNGG 8 cut(s) 134, 141, 327, 354, 518, 525, 587, 972
AgsI TTSAA 5 cut(s) 385, 1018, 1180, 1234, 1344
AhlI ACTAGT 1 cut(s) 40
AjiI CACGTC 2 cut(s) 557, 623
AjnI CCWGG 1 cut(s) 1244
AluBI AGCT 7 cut(s) 257, 389, 737, 894, 934, 1186, 1350
AluI AGCT 7 cut(s) 257, 389, 737, 894, 934, 1186, 1350
Alw21I GWGCWC 2 cut(s) 259, 775
Alw26I GTCTC 1 cut(s) 918
AlwI GGATC 4 cut(s) 61, 436, 837, 1081
Ama87I CYCGRG 2 cut(s) 364, 748
Aor51HI AGCGCT 1 cut(s) 851
AoxI GGCC 8 cut(s) 90, 345, 589, 688, 755, 820, 1247, 1256
ApeKI GCWGC 7 cut(s) 81, 250, 395, 629, 672, 835, 898
ApoI RAATTY 2 cut(s) 1051, 1266
AspLEI GCGC 6 cut(s) 554, 835, 840, 852, 866, 1035
AspS9I GGNCC 2 cut(s) 689, 1256
AsuHPI GGTGA 3 cut(s) 15, 239, 647
AsuNHI GCTAGC 2 cut(s) 358, 890
AvaI CYCGRG 2 cut(s) 364, 748
AxyI CCTNAGG 1 cut(s) 1272
BaeGI GKGCMC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 259, 775
BbvCI CCTCAGC 1 cut(s) 824
BbvI GCAGC 7 cut(s) 93, 262, 382, 641, 659, 847, 885
BccI CCATC 2 cut(s) 359, 930
BceAI ACGGC 3 cut(s) 357, 680, 703
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 1246
BclI TGATCA 1 cut(s) 1188
BcoDI GTCTC 1 cut(s) 918
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 5 cut(s) 41, 359, 734, 891, 1130
BfmI CTRYAG 2 cut(s) 609, 812
BfoI RGCGCY 1 cut(s) 853
BfuAI ACCTGC 3 cut(s) 294, 666, 869
BglI GCCNNNNNGGC 2 cut(s) 378, 1255
Bme1390I CCNGG 1 cut(s) 1246
BmeT110I CYCGRG 2 cut(s) 364, 748
BmgBI CACGTC 2 cut(s) 557, 623
BmgT120I GGNCC 2 cut(s) 689, 1256
BmiI GGNNCC 1 cut(s) 1300
BmrFI CCNGG 1 cut(s) 1246
BmtI GCTAGC 2 cut(s) 362, 894
BoxI GACNNNNGTC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 1100
BpmI CTGGAG 3 cut(s) 776, 1169, 1333
Bpu10I CCTNAGC 1 cut(s) 824
BsaHI GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
BsaJI CCNNGG 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 8 cut(s) 134, 141, 327, 354, 518, 525, 587, 972
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 4 cut(s) 19, 592, 1138, 1302
Bse21I CCTNAGG 1 cut(s) 1272
BseBI CCWGG 1 cut(s) 1246
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 4 cut(s) 190, 199, 351, 468
BseLI CCNNNNNNNGG 8 cut(s) 134, 141, 327, 354, 518, 525, 587, 972
BseMII CTCAG 5 cut(s) 536, 838, 1200, 1263, 1364
BseNI ACTGG 4 cut(s) 19, 592, 1138, 1302
BseRI GAGGAG 5 cut(s) 51, 54, 111, 121, 537
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 7 cut(s) 93, 262, 382, 641, 659, 847, 885
BseYI CCCAGC 2 cut(s) 829, 846
BsgI GTGCAG 2 cut(s) 269, 658
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 2 cut(s) 156, 502
BshFI GGCC 8 cut(s) 92, 347, 591, 690, 757, 822, 1249, 1258
BshNI GGYRCC 1 cut(s) 1298
BsiEI CGRYCG 2 cut(s) 156, 502
BsiHKAI GWGCWC 2 cut(s) 259, 775
BsiHKCI CYCGRG 2 cut(s) 364, 748
BsiSI CCGG 9 cut(s) 93, 135, 173, 262, 344, 355, 481, 519, 768
BslFI GGGAC 5 cut(s) 111, 163, 349, 489, 541
BslI CCNNNNNNNGG 8 cut(s) 134, 141, 327, 354, 518, 525, 587, 972
BsmAI GTCTC 1 cut(s) 918
BsmBI CGTCTC 1 cut(s) 918
BsmFI GGGAC 5 cut(s) 111, 163, 349, 489, 541
BsnI GGCC 8 cut(s) 92, 347, 591, 690, 757, 822, 1249, 1258
BsoBI CYCGRG 2 cut(s) 364, 748
Bsp1286I GDGCHC 3 cut(s) 259, 640, 775
Bsp19I CCATGG 1 cut(s) 269
BspANI GGCC 8 cut(s) 92, 347, 591, 690, 757, 822, 1249, 1258
BspCNI CTCAG 5 cut(s) 537, 837, 1201, 1264, 1365
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 1300
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 3 cut(s) 294, 666, 869
BspOI GCTAGC 2 cut(s) 362, 894
BspPI GGATC 4 cut(s) 61, 436, 837, 1081
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 1298
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 4 cut(s) 19, 592, 1138, 1302
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 269
BssNI GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 1246
Bst4CI ACNGT 5 cut(s) 32, 245, 715, 782, 967
Bst6I CTCTTC 3 cut(s) 320, 567, 859
BstACI GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
BstAPI GCANNNNNTGC 1 cut(s) 635
BstDEI CTNAG 5 cut(s) 545, 824, 1209, 1272, 1373
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 4 cut(s) 190, 199, 351, 468
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 853
BstHHI GCGC 6 cut(s) 554, 835, 840, 852, 866, 1035
BstMAI GTCTC 1 cut(s) 918
BstMCI CGRYCG 2 cut(s) 156, 502
BstMWI GCNNNNNNNGC 9 cut(s) 219, 375, 378, 395, 635, 717, 872, 904, 1255
BstNI CCWGG 1 cut(s) 1246
BstPAI GACNNNNGTC 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 1244
BstSFI CTRYAG 2 cut(s) 609, 812
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 7 cut(s) 93, 262, 382, 641, 659, 847, 885
BstV2I GAAGAC 1 cut(s) 1100
BstX2I RGATCY 2 cut(s) 441, 842
BstYI RGATCY 2 cut(s) 441, 842
Bsu36I CCTNAGG 1 cut(s) 1272
BsuRI GGCC 8 cut(s) 92, 347, 591, 690, 757, 822, 1249, 1258
BtgI CCRYGG 1 cut(s) 269
BtrI CACGTC 2 cut(s) 557, 623
BtsCI GGATG 4 cut(s) 190, 199, 351, 468
BtsI GCAGTG 3 cut(s) 161, 497, 758
BtsIMutI CAGTG 4 cut(s) 161, 497, 758, 977
BveI ACCTGC 3 cut(s) 294, 666, 869
CfoI GCGC 6 cut(s) 554, 835, 840, 852, 866, 1035
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 2 cut(s) 689, 1256
CseI GACGC 7 cut(s) 127, 185, 346, 387, 466, 524, 900
Csp6I GTAC 3 cut(s) 681, 1153, 1317
CviAII CATG 1 cut(s) 270
CviQI GTAC 3 cut(s) 681, 1153, 1317
DdeI CTNAG 5 cut(s) 545, 824, 1209, 1272, 1373
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 320, 567, 859
EarI CTCTTC 3 cut(s) 320, 567, 859
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 1249
Eco24I GRGCYC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 851
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 3 cut(s) 422, 548, 1101
Eco81I CCTNAGG 1 cut(s) 1272
Eco88I CYCGRG 2 cut(s) 364, 748
EcoICRI GAGCTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 1244
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 918
FaeI CATG 1 cut(s) 273
FaqI GGGAC 5 cut(s) 111, 163, 349, 489, 541
FatI CATG 1 cut(s) 269
FauI CCCGC 2 cut(s) 654, 880
FbaI TGATCA 1 cut(s) 1188
FblI GTMKAC 2 cut(s) 401, 615
FokI GGATG 4 cut(s) 177, 186, 338, 475
FriOI GRGCYC 1 cut(s) 259
FspBI CTAG 5 cut(s) 41, 359, 734, 891, 1130
FspI TGCGCA 2 cut(s) 553, 865
GlaI GCGC 6 cut(s) 553, 834, 839, 851, 865, 1034
GsaI CCCAGC 2 cut(s) 833, 850
GsuI CTGGAG 3 cut(s) 776, 1169, 1333
HaeII RGCGCY 1 cut(s) 853
HaeIII GGCC 8 cut(s) 92, 347, 591, 690, 757, 822, 1249, 1258
HapII CCGG 9 cut(s) 93, 135, 173, 262, 344, 355, 481, 519, 768
HgaI GACGC 7 cut(s) 127, 185, 346, 387, 466, 524, 900
HhaI GCGC 6 cut(s) 554, 835, 840, 852, 866, 1035
Hin1I GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
Hin1II CATG 1 cut(s) 273
Hin6I GCGC 6 cut(s) 552, 833, 838, 850, 864, 1033
HinP1I GCGC 6 cut(s) 552, 833, 838, 850, 864, 1033
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 1348
HinfI GANTC 6 cut(s) 105, 801, 885, 1096, 1167, 1331
HpaII CCGG 9 cut(s) 93, 135, 173, 262, 344, 355, 481, 519, 768
HphI GGTGA 3 cut(s) 15, 239, 647
Hpy166II GTNNAC 3 cut(s) 402, 408, 616
Hpy188I TCNGA 5 cut(s) 234, 441, 546, 567, 800
Hpy188III TCNNGA 8 cut(s) 142, 186, 294, 468, 512, 793, 1090, 1271
Hpy8I GTNNAC 3 cut(s) 402, 408, 616
Hpy99I CGWCG 7 cut(s) 143, 245, 378, 403, 406, 518, 786
HpyCH4III ACNGT 5 cut(s) 32, 245, 715, 782, 967
HpyCH4IV ACGT 6 cut(s) 124, 404, 430, 530, 556, 622
HpyF10VI GCNNNNNNNGC 9 cut(s) 219, 375, 378, 395, 635, 717, 872, 904, 1255
HpyF3I CTNAG 5 cut(s) 545, 824, 1209, 1272, 1373
HpySE526I ACGT 6 cut(s) 124, 404, 430, 530, 556, 622
Hsp92I GRCGYC 7 cut(s) 124, 138, 338, 404, 430, 516, 530
Hsp92II CATG 1 cut(s) 273
HspAI GCGC 6 cut(s) 552, 833, 838, 850, 864, 1033
Ksp22I TGATCA 1 cut(s) 1188
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 7 cut(s) 93, 262, 382, 641, 659, 847, 885
MaeI CTAG 5 cut(s) 41, 359, 734, 891, 1130
MaeII ACGT 6 cut(s) 124, 404, 430, 530, 556, 622
MaeIII GTNAC 1 cut(s) 21
MboII GAAGA 5 cut(s) 337, 554, 846, 1088, 1105
MflI RGATCY 2 cut(s) 441, 842
MhlI GDGCHC 3 cut(s) 259, 640, 775
MluCI AATT 4 cut(s) 1051, 1122, 1266, 1279
MlyI GAGTC 2 cut(s) 879, 1090
MmeI TCCRAC 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 9 cut(s) 93, 135, 173, 262, 344, 355, 481, 519, 768
MspR9I CCNGG 1 cut(s) 1246
MteI GCGCNGCGC 1 cut(s) 836
MvaI CCWGG 1 cut(s) 1246
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 9 cut(s) 219, 375, 378, 395, 635, 717, 872, 904, 1255
NcoI CCATGG 1 cut(s) 269
NheI GCTAGC 2 cut(s) 358, 890
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 1300
NmuCI GTSAC 1 cut(s) 21
NsbI TGCGCA 2 cut(s) 553, 865
PaqCI CACCTGC 2 cut(s) 666, 869
PceI AGGCCT 1 cut(s) 1249
PciSI GCTCTTC 1 cut(s) 859
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PfeI GAWTC 4 cut(s) 105, 801, 1167, 1331
Ple19I CGATCG 2 cut(s) 156, 502
PleI GAGTC 2 cut(s) 879, 1090
PpsI GAGTC 2 cut(s) 879, 1090
PshAI GACNNNNGTC 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 1244
PspFI CCCAGC 2 cut(s) 829, 846
PspGI CCWGG 1 cut(s) 1244
PspN4I GGNNCC 1 cut(s) 1300
PspPI GGNCC 2 cut(s) 689, 1256
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 441, 842
PvuI CGATCG 2 cut(s) 156, 502
RsaI GTAC 3 cut(s) 682, 1154, 1318
RsaNI GTAC 3 cut(s) 681, 1153, 1317
SacI GAGCTC 1 cut(s) 259
SalI GTCGAC 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 859
Sau96I GGNCC 2 cut(s) 689, 1256
SchI GAGTC 2 cut(s) 879, 1090
ScrFI CCNGG 1 cut(s) 1246
SduI GDGCHC 3 cut(s) 259, 640, 775
SfcI CTRYAG 2 cut(s) 609, 812
SfiI GGCCNNNNNGGCC 1 cut(s) 1255
SgrAI CRCCGGYG 1 cut(s) 767
SgrDI CGTCGACG 1 cut(s) 400
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 4 cut(s) 1051, 1122, 1266, 1279
SseBI AGGCCT 1 cut(s) 1249
SspMI CTAG 5 cut(s) 41, 359, 734, 891, 1130
SstI GAGCTC 1 cut(s) 259
StuI AGGCCT 1 cut(s) 1249
StyD4I CCNGG 1 cut(s) 1244
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 5 cut(s) 32, 245, 715, 782, 967
TaiI ACGT 6 cut(s) 127, 407, 433, 533, 559, 625
TaqI TCGA 5 cut(s) 72, 108, 205, 240, 401
TasI AATT 4 cut(s) 1051, 1122, 1266, 1279
TauI GCSGC 3 cut(s) 216, 372, 381
TfiI GAWTC 4 cut(s) 105, 801, 1167, 1331
TscAI CASTG 4 cut(s) 168, 497, 765, 977
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 7 cut(s) 81, 250, 395, 629, 672, 835, 898
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 993
TspRI CASTG 4 cut(s) 168, 497, 765, 977
XapI RAATTY 2 cut(s) 1051, 1266
XcmI CCANNNNNNNNNTGG 2 cut(s) 329, 415
XmiI GTMKAC 2 cut(s) 401, 615
XspI CTAG 5 cut(s) 41, 359, 734, 891, 1130
ZraI GACGTC 4 cut(s) 125, 405, 431, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.